Protein Info for mRNA_5096 in Rhodosporidium toruloides IFO0880

Name: 13464
Annotation: K11292 SUPT6H, SPT6 transcription elongation factor SPT6

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1406 PF14641: HTH_44" amino acids 151 to 266 (116 residues), 83.8 bits, see alignment E=3.2e-27 PF14639: YqgF" amino acids 709 to 758 (50 residues), 52.1 bits, see alignment (E = 1.6e-17) PF14635: HHH_7" amino acids 760 to 862 (103 residues), 105.7 bits, see alignment 3.9e-34 PF17674: HHH_9" amino acids 883 to 970 (88 residues), 30.6 bits, see alignment 1.3e-10 PF14633: SH2_2" amino acids 1084 to 1294 (211 residues), 243.1 bits, see alignment E=5.5e-76

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1406 amino acids)

>mRNA_5096 K11292 SUPT6H, SPT6 transcription elongation factor SPT6 (Rhodosporidium toruloides IFO0880)
MAGFIEDDTDESRSEAGDSDEDREGGRAARQGKKKRDERRKRAEKAGARRRGGFATGRVE
GMTAEAWGEVAEVFGNGQDYAWAMDLDDEEDDKPKELKDIFEPSEIASRMLTEEDEKIRT
TDVPERQQLASVGLPPFEFDAEGALLPLIPESELPTAAVWMADKLPRSTTAQFLLRDDEG
NAPPLHDAFLRAIQNVVKFINNDFLEPPHIWNHRSDYLFHAPSGENPVALLTEDDVWRIS
QLSIKFRAFLARKKEVAAQYASIGSVDVHLEEVMDQAASVEEIMDAQGWLGLRYADRLEE
AKKTKKEEGGENGAADEQDDEERARAERAAEVDRVKRPKRATIENEYQTARKTVVTRLAE
LINISPADFALDVTQQQKTHFAEDPDKSPLDLADEFVVDPEFPTRHAALAAAKMILVTEL
GHEPLLRKEARRFFKDFAVVNVAATKAGEAKIDVLNPYYAFKYLKNKPVVEFTRSAQWLQ
ILAAEVEGLVTASIDLPQAAYDKLMSDFSKMYLSDYTSALADEWNKLREEILKQAVEEYL
LPQGAAWTRGWIKEESEEAVADACKRKLEKRIDAAPWCRQDDTMEPGDTPSVLALSNGRG
DPKRDSVVGVFLDSDGHFREHFKFDTIAGDMDEAQREQFTEFLKRRRPQVVVVGGFSPAV
PHLLQDFRIFAEGVSTQLYEDGAADDDEADEGKSPDEVERRKRNRAAFESTIVYDEIAKI
YQNSQRAAQEFTELSTLGKYCVGLARYTQSPLNEYAALGQDLTALSYDPNQKYLAKDKLV
QALERSLISVTNRVGVDINRATRDPYYAHLLPYVSGLGLRKADACIKKINAIGGTLTTRS
GLVMQSIVTRNIFINVAGFLRIRQDDLAADLELEVEGQEDPDVLDDTRIHPEDYDVARKM
ASDAMEYDEEDLEGAAPSKAVADLLDDDVRKLDELALDEFADELSKVLGQPKRLTLHRIR
EELKKPFQEKRVPFVVPGPEERFTMFTGETRSTLDQGLIVPVRVLRVTPDEAVIARLDCG
INGTIEREYRTNGTNVAKLRAGQTLQAMIISVDYGNFSVNLTTQENMIDAGDVERRQVKQ
DVWFDKEREAAERRIAQQQSQRQAGKTKRVINHPNYQDISAGKAEEYLANMQRGDCVIRP
SSREDHIAVTWKVAEGIYQHIAVHELNKPNAYSLGTQLRIDDKHRYSDLDELIDAHIKQM
ARKVNELTSNERFKGTKEQLEKFLSTWTNANPGKSIYAFGWESDRRKAGQVVLGFKTNEK
SPVQYWPVFVVPEGYMLKGSVHGDIPSLINAFKIAYSSGMGGARVPNLAPGRTPYGAGVT
GTTPNPYGRTPNPHLNPQQGSRTPINYGQPQPTYGTGRTPQPGPGMGAGTGYGGRTPGYP
GAGGPPGGGQYGMPPPAPYATGYGPR