Protein Info for mRNA_5103 in Rhodosporidium toruloides IFO0880

Name: 13471
Annotation: K03099 SOS son of sevenless

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1489 PF07653: SH3_2" amino acids 15 to 69 (55 residues), 47.7 bits, see alignment (E = 3.1e-16) PF00018: SH3_1" amino acids 17 to 64 (48 residues), 54.5 bits, see alignment (E = 2.1e-18) PF14604: SH3_9" amino acids 18 to 68 (51 residues), 41.9 bits, see alignment (E = 2.2e-14) PF00618: RasGEF_N" amino acids 1073 to 1177 (105 residues), 82.6 bits, see alignment 6.7e-27 PF00617: RasGEF" amino acids 1236 to 1414 (179 residues), 206.5 bits, see alignment E=1.1e-64

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1489 amino acids)

>mRNA_5103 K03099 SOS son of sevenless (Rhodosporidium toruloides IFO0880)
MGDAAHPVTATEPLFVRALYSYNGADSSSLSFRQGDIIEVLSTLESGWWDGVVLQSGVRG
WFPSNFVEELSEDEAMWVANGGEDTRRGSIASQTSRRDSERGDFSSGTLSAFAGMDLNGG
LARDPTLQDFMSGGEFDLSSFSTGGDIFGEIAAATSAVPSSATSFAPMSRQQSAASRTGP
LHASTLSIDSSSGDADYWIPKMGRNGQLFYYNSQTGETSRDMPIDGKGDGTRIDPSEFGT
EEAGPSNGGFVDLRRPSTDSEWSERMTEDGRGVYYVNLRTGEQSWDPPTSSSRRTSIRPR
APAADAASLLSSWTERPAHPTPADLAAAEHPGADGSKRVSAASDDSALDATFANSARRER
RASDDADGGDAMGPGRSPRKASAATTELLGPPPPPLVNDLEEMASRALQELVAFVALGGV
ANGSSGRNPAEQRDQLVQAGDDVVHAIRVVLHATGALEHSVLTSPFASSVSPVNEIASSL
PPRPPLPPSAQAELRPYSRRLISTLSKLSFSLRAMWGLLETTAEDQFVPEDDTPADPEEV
LRRAQARQQALTDRRIARDARFEHETKLRTEILQGAQDVGGQVSNFLRAFQSIILSLVAA
GVFPPAPLADLRAPKSLQGSLRTEATALLLPGGGFGGNWRGNGFVSLPTAREAHTPPSGK
ALAYDWPSKPISRDVVDDFARESHQLVEHASTLASMAGGTAAYEQAAAMQRTLAKLLARV
EDIDVAAGVDSQMPRADDSRPNSTDSVADSLSGYSASVSEAKSLLADFETRKQALYDIAP
RLLVALQPSGFSRSRGSPVTASQPLVNAPLAGMSLPTLAGPASPSAQLSVLANDIPHLVS
SLCDTLHALADTAEKQAKAPKHVRQASRSYRDSAFGTSTAESLTSGSAARFSQGQQSTVP
STVPSVRDSVDSDFFFSGQAVPSHPGDSPRASLAPSSSDKGTIRSQTSINGVGSVRGSIP
LASRSSVSNNSSVEVLDTPSGLPPGWDGRRRGSVATTMTSSSGGGMAGQSLPSLVEGPSD
PHFSPSRGSAKNIQKLLGELPPELMQQPEPSRPWYLERDWNDEDLSFTMENTIKGGTLRG
LVIAATSHEGRVDSSYLSAFLMTYRTFCSAHELLGHLVERYLMPRPQGLSPEEYHDWEAK
KQRPVRARVTNLLKAWVREYMDNEDLDRDVLERIRDFALNTMAEKGQSLQICKSVDEKLQ
GASRRPVGNLAPGPLPQPIVPRNLKKIKLVDIEPLELARQLTIMDGRLFQRITPQECLSK
AWPKQFGSEAPNISAMIDMSNAVTRWVTESILAQEDLKKRAAVVKHFVAIAERCLALNNF
STLIHIIAGLNSTPIHRLRRTWEVVSQKTMITLGMLNRLMKPDKNYKEYRDILRKSAPPC
VPFLGVYLTDWTFIGDGNPDTIREKPHQINFQKRQKASELILMIKLHQATTYNLQAVPAI
AKFLQDALFPQFLDPANEDQRLYEISLALEPRERDDEKIARLLSESGFL