Protein Info for mRNA_5117 in Rhodosporidium toruloides IFO0880

Name: 13485
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 532 transmembrane" amino acids 55 to 78 (24 residues), see Phobius details amino acids 103 to 125 (23 residues), see Phobius details amino acids 134 to 152 (19 residues), see Phobius details amino acids 158 to 183 (26 residues), see Phobius details amino acids 194 to 215 (22 residues), see Phobius details amino acids 225 to 244 (20 residues), see Phobius details amino acids 313 to 334 (22 residues), see Phobius details amino acids 346 to 367 (22 residues), see Phobius details amino acids 376 to 396 (21 residues), see Phobius details amino acids 404 to 427 (24 residues), see Phobius details amino acids 448 to 467 (20 residues), see Phobius details amino acids 473 to 490 (18 residues), see Phobius details TIGR00879: MFS transporter, sugar porter (SP) family" amino acids 13 to 502 (490 residues), 246.3 bits, see alignment E=2.8e-77 PF00083: Sugar_tr" amino acids 58 to 507 (450 residues), 224.1 bits, see alignment E=3.4e-70 PF07690: MFS_1" amino acids 62 to 446 (385 residues), 77.1 bits, see alignment E=1.3e-25

Best Hits

KEGG orthology group: None (inferred from 45% identity to pcs:Pc12g01810)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (532 amino acids)

>mRNA_5117 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MSFLTRSDSKSDTDKMEEKHVEDSSFVEEGHTAVAKAPDGGLNVRQALSVWRKGVAWSVV
LSLAVMMESYNTILLNSLYAAPPFQQDYGVRLKSGKYQIPAKWQSALGSGTVAATILGVL
LAAPLIDRFGYRKVMIGGLVWAFGFSWLIFLSKDLAQLLAGNMCSALPWGAFIVCAVSYA
VEVVPTSLRSYLSSYVNLCFVIGHVIGAGVLRASISYNNDWTYKLPFLLICIPPLPIALA
LCWAPESPYWLARKGRLEDAAVAMDRLHAPHADIDSKALVAHIHETYRVEQEMRTGGSFV
DLFKGSNLRRTELATIAWTSPGLVGYVVQFYQTFFFTRAGFPTDKAFALGLGSYAIAFVG
GVVSWFLQARLGRRTIILFGLSAMLPIMLLVGSLDFVKSQSGHWAQAILFLVWFFFYGST
QGPIPYAVASEIPAVKLRAKTLAIARSVYYTFFISSTVLSPYMLQTWDMKGKAAYPAAGF
TAFLLVWTYFRLPETKNRSFEELDIMFGLRLPARKFSSYVVTEEDRRTVGHI