Protein Info for mRNA_5118 in Rhodosporidium toruloides IFO0880

Name: 13486
Annotation: K05349 bglX beta-glucosidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 851 PF00933: Glyco_hydro_3" amino acids 41 to 285 (245 residues), 170.6 bits, see alignment E=1.2e-53 PF01915: Glyco_hydro_3_C" amino acids 320 to 722 (403 residues), 177.6 bits, see alignment E=6.5e-56 PF07691: PA14" amino acids 456 to 527 (72 residues), 35.8 bits, see alignment E=1.4e-12 PF14310: Fn3-like" amino acids 757 to 829 (73 residues), 84.8 bits, see alignment E=7.3e-28

Best Hits

Predicted SEED Role

"Beta-glucosidase (EC 3.2.1.21)" in subsystem Beta-Glucoside Metabolism or Fructooligosaccharides(FOS) and Raffinose Utilization (EC 3.2.1.21)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.21

Use Curated BLAST to search for 3.2.1.21

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (851 amino acids)

>mRNA_5118 K05349 bglX beta-glucosidase (Rhodosporidium toruloides IFO0880)
MVSHKFVKFDVDKKLAELSLAEKLKLLGGKDFWTFEDVPEKGIPSVRTSDGPNGVRGRNF
FNGVPSSCFPCGTGLAASFDVEMVQRVGEALGNECIAKSAHVLLGPTVNTQRSPLGGRGF
ESYSEDPTLSGLVAAAYINGVQSQNVAATIKHFVANDQEFERFSSSSEVSQRALREIYLE
PFRLAVKHSKPKAFMTAYNRLNGLHCSEDKNLLDGILRGEWGWKGLVMSDWTGVYSVEES
IKAGLDVEMPGPPVMRNVSNVARVLGAGKLTMEEIDARVRTVLEVVNYAIDSGIPFYGGE
TKVDTPELRALLREAAANATVVLKNDSKLLPLGPASLAGKKVAVIGSNAKLAFPSGGGSA
SLNASWVVSPFEAIVSAATQAGAASLDHAIGVASFRYVPLCDPYLSNARIDFYSTTPPPH
WFARADTAPKQANYSIETATSNAFLIGTIPWEKLGMHVSTRYTATFTPDVSGPWTFGLGS
IGGAVLFVDGQRVVDNTKPTPGELFFTMGSTEVYGDIELEAGRAYQLDLHGYADPEAFGP
SPFSFKASFRLGAFPKATPEAMREEAIDLASNSDVAIVVVGTNPDWESEGFDRKNMRNPG
ETDALVRAVLRVQPNTIVVNQSGTPVEFPWVEEASTLVHTFFGGNELGNGLADVLFGKVA
AAGRLPLTFPVRLEDNPSFNSFGITSDTPGKVFYGEGIYVGYRHYDRLQLAPAFPFGFGL
SYTTFTFDSLELSTPSSSGDFTVSFRIANTGERDGAEVAQVYISAPSDGLRITSPVKELK
AFRKVSLAAGESKEVVVELSREAFSYWDESVSLWVAPAGAYRVLVATSSAEGDVKLEGTV
RLEQEIRWNGL