Protein Info for mRNA_5120 in Rhodosporidium toruloides IFO0880

Name: 13488
Annotation: K11279 NAP1L1, NRP nucleosome assembly protein 1-like 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 410 PF00956: NAP" amino acids 101 to 383 (283 residues), 303.5 bits, see alignment E=6.3e-95

Best Hits

KEGG orthology group: K11279, nucleosome assembly protein 1-like 1 (inferred from 54% identity to cne:CNE04440)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (410 amino acids)

>mRNA_5120 K11279 NAP1L1, NRP nucleosome assembly protein 1-like 1 (Rhodosporidium toruloides IFO0880)
MAQNIPTDPSRLGPGGDVAPTPQNTPAVHTLTGSMISRPQIPATLGEEDEGVETIGSRDA
QGLGALAGNPAFASLVQNRLSGLIGRSSGYVESLPPAIQYRLTALKGVQRDHSALEAEFQ
KEIFELEKRFAEKYRPLYERRRAIIEGADEPKEEEIEKGVKVEEEEDEDDFEDEDEDEED
EGAHKKQHGVKPTAEELAAAPKGIPEFWLTALKNHLGLSELITERDEEALKHLVDIRVTY
PEGGKSGFTLVFEFGAGAQEFFENKNLEKTYYYQDEVGYEGDFVYSHAEGTQIQWKEGKD
LTVKIETKKQRNKNTNQTRIVKKVVPTESFFTFFNPPKPPSADDDDDASIASDLEEKLEL
DYQIGEDLKERVVPRAIDFFTGKALRFGQEADFDSEDYDDEFDDEDDDEY