Protein Info for mRNA_5128 in Rhodosporidium toruloides IFO0880

Name: 13496
Annotation: K08342 ATG4 cysteine protease ATG4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1139 PF03416: Peptidase_C54" amino acids 669 to 1018 (350 residues), 316.1 bits, see alignment E=1.1e-98

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1139 amino acids)

>mRNA_5128 K08342 ATG4 cysteine protease ATG4 (Rhodosporidium toruloides IFO0880)
MQDPTAPAALDASHPLVPSPPHPDSSSSSTRLPRSASANLMQRTDVVAEGATREGLEAGG
VAVSMPKMMGNPTRNAVGETSDDGIRLVGSYDSTSDVAPLSLTSTSPYETVSVPPPSAAQ
PDTLLSPSSQPNKLAKWLSRSSASTSSSGSSPSQSATGPPESPTKTRKTRSRSIGSLNLL
TRSVNRPPEPEQSTSSLPPPAAPTISISSSPSTQFDSQPPTDYSSTSALPAPSTSSAPRR
SSVTSTSTSSSSAHSRPSSSHSANSAQQKRSLSASLSLRPSSSSSSRRNKKGKSPAAAHE
AEDEWATAELEEGDEDGRRISEAMVRAVSRTSTVSALSGGSSTNGPQKGEGRLARGLRKT
RSGLKLFGRAKEQAAQEAEGVAIVGAGHVPSNASSSMLDVSSGVESAVTPTSSSFPSSVS
PMSDSALSTSPPPLSGSLPSTSGAPLSPNHNVANRIGGWFSSMLHPSTSAGGAAPFSGQS
EQQRGSTTSLHSSPEKMRSPPSRQPGSPSAFALRQSTTSASPLKKGSSSSTTGQGRLGPF
DRMLDRAVQYFLDTDSQADKCEEDIWVLGVRHPGWRAEADETGAGEEAAQEEQVRKKKSL
SSLGRKGKSPVKARKVPPVPSAAAATTQIPIGDDDPFLVSTPTAENGSTTSLGSVPSAPP
STINGWPAAFYHDSYSRIALTYRSGFPIIPCDPSSSSTGVVQGMLNNLSMSIGRGGHRGP
SPTNAEGGLSSDTGWGCMLRTGQSLLANALVKVHLGRDWRRPLPLGDFITSSTSPVPSAA
TYARILSLFLDDPSPISPFSVHRFAQQGKVLGKEIGEWFGPSTAAGAIKTLVNAYEPAGL
KVVSCVDGTVYESEVVAASTKDGEKWKTPVLVLINVRLGIDGVNPIYYEAIKGIFRLPQS
VGIAGGRPSSSYYFVGAQANSLFYIDPHHPRPAVPLVLPPDDSLVRAAQHLPLTPSTADT
PAKESARQLDDFLLAAYPDAAWATYHTDKVRKCALSSLDPSMLLGFLVEDERDWQDFRLR
VQELSQASSPIFAIAPSPPSWMRRSTSSAAPATVSALSPTIGDDSFSEVAGEDVADADSA
GFSEPEDWELQSTEGEEDAPESTPVVARKEPSAGLGGAAVVVGEASRSEVKADEGWQGV