Protein Info for mRNA_5139 in Rhodosporidium toruloides IFO0880

Name: 13507
Annotation: KOG1944 Peroxisomal membrane protein MPV17 and related proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 transmembrane" amino acids 51 to 71 (21 residues), see Phobius details amino acids 177 to 197 (21 residues), see Phobius details amino acids 207 to 233 (27 residues), see Phobius details amino acids 238 to 255 (18 residues), see Phobius details PF04117: Mpv17_PMP22" amino acids 193 to 254 (62 residues), 60.9 bits, see alignment E=5.6e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (262 amino acids)

>mRNA_5139 KOG1944 Peroxisomal membrane protein MPV17 and related proteins (Rhodosporidium toruloides IFO0880)
MASPLKAAHTWLFDTHPKAGVAVMYGTLNAIGDTLAQTFFSSTPFDPARTLRFWLFGVGI
APLALMWNAYLERNYPLRPTSSVPHPEEPVPLESIQIHSSSTHSRPSSLQANGLGLVADD
KDSKLAHHRRKSSVGVQAVEAMTRSPLLGGQEALGAKEDAVPSVDKVVLARRVGVDQIIM
APISFIVFLVAMGLMEFKSPSAIWLKIQGAFFAILWTNYKVWPFIQVVMFLYVPLKYRVP
LSGCINVLWTVYLSWETAVKTK