Protein Info for mRNA_5151 in Rhodosporidium toruloides IFO0880

Name: 13519
Annotation: HMMPfam-SUR7/PalI family-PF06687

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 275 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 38 to 54 (17 residues), see Phobius details amino acids 167 to 187 (21 residues), see Phobius details amino acids 193 to 217 (25 residues), see Phobius details amino acids 245 to 266 (22 residues), see Phobius details PF06687: SUR7" amino acids 8 to 257 (250 residues), 76.7 bits, see alignment E=1e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (275 amino acids)

>mRNA_5151 HMMPfam-SUR7/PalI family-PF06687 (Rhodosporidium toruloides IFO0880)
MVNFCAGTGILFSFAATILLVFVHITQITPSLIPRHLRIVAIDTSGLSTALAAAAKSSGV
SIATGNFSDIYNTEPVGQGYFVKGQNESRHDGLRKTYEWGLWSYCSTNGNIGSPRSYCID
RSINERFEPAQVLMEDIPTQYSDLLQKVLPSNVFTADNYLGSYTEGASYVILAGSLATAL
AALIGLFARRGAFILACLLSIVGFLGLAVGAVIYQVIYTRAQDAINQATTSGVDLGITLD
YGNALWILWAATGLMLLAIVPYAVACCTGRHDRAY