Protein Info for mRNA_5171 in Rhodosporidium toruloides IFO0880

Name: 13539
Annotation: KOG2262 Sexual differentiation process protein ISP4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 742 transmembrane" amino acids 46 to 67 (22 residues), see Phobius details amino acids 74 to 94 (21 residues), see Phobius details amino acids 127 to 147 (21 residues), see Phobius details amino acids 159 to 177 (19 residues), see Phobius details amino acids 183 to 203 (21 residues), see Phobius details amino acids 221 to 246 (26 residues), see Phobius details amino acids 258 to 277 (20 residues), see Phobius details amino acids 288 to 310 (23 residues), see Phobius details amino acids 367 to 391 (25 residues), see Phobius details amino acids 423 to 443 (21 residues), see Phobius details amino acids 449 to 473 (25 residues), see Phobius details amino acids 481 to 506 (26 residues), see Phobius details amino acids 531 to 550 (20 residues), see Phobius details amino acids 570 to 588 (19 residues), see Phobius details amino acids 603 to 621 (19 residues), see Phobius details amino acids 628 to 644 (17 residues), see Phobius details amino acids 650 to 667 (18 residues), see Phobius details amino acids 678 to 700 (23 residues), see Phobius details TIGR00727: small oligopeptide transporter, OPT family" amino acids 21 to 704 (684 residues), 714.5 bits, see alignment E=1.8e-218 TIGR00728: oligopeptide transporter, OPT superfamily" amino acids 27 to 702 (676 residues), 593 bits, see alignment E=8.7e-182 PF03169: OPT" amino acids 43 to 698 (656 residues), 615 bits, see alignment E=8.8e-189

Best Hits

KEGG orthology group: None (inferred from 53% identity to lbc:LACBIDRAFT_255292)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (742 amino acids)

>mRNA_5171 KOG2262 Sexual differentiation process protein ISP4 (Rhodosporidium toruloides IFO0880)
MVDAARLEQDDLTTDDFEELEDSPYAEVQASVSNLDDPEMPVLTFRTWFIGLLFSIVISA
FNCFFYLRYPAPLITPIITQVLSYPIGKLLSRILPYRTWRLPRWTRRLGLPESFSLNPSP
FNIKEHAAIVIMANISTSPAFGLNYTLVAEKFYRQHQPFGLDILLILTTQMIGYGAAGLC
RRFLVWPASMIWPQNLVFATLLNTLHAEADEDEKGPSRFRFFFYVFAGAFAWFWLPGFLF
VALSAFSWVCWIAPNNVIVNQLFGVSSGLGMGLFTFDWSQIAFLGSPLVIPWWAEVNTFV
AFAIAYWVISPIMYYKNVWNTAYLPMSTNMVFDRFGAPYNTSAVVDRVGMKLNETAYQEY
SPLYLPITYATVYGISFMLATSIIVHTALYHGKEIFQRVRRARNEKDDVHMRLMRNYREV
PDWWYLAFLVIAVALTIVTVACWDTYMPVWSVVVAILIGLIYLVPAGFIFAVTTYPVSIN
LIVELVAGYIIPGLPLANILFKLYAVQVLNLGLYFVQDLKLGHYMKIPPRATFSVQVVAT
FVTAFVQVGIKRWLVAVVPDLCASNQSAHLVCPYARSFFSASIVWGLIGPARQFDIGDYY
NPILFWMLAGAILPVITWLLVRRYPNSWVRLISVPAALAGATFMPPATGINYSSSVLMCF
IFQFVIRHRFFKWWSKYNFILSAGLDAGTVVCGIVIFLTLQLPKGGTISLNWWGNSVYTN
TLDWQGVSYKMAPPEGFGRTSW