Protein Info for mRNA_5173 in Rhodosporidium toruloides IFO0880

Name: 13541
Annotation: KOG1189 Global transcriptional regulator, cell division control protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1009 PF14826: FACT-Spt16_Nlob" amino acids 2 to 151 (150 residues), 152.7 bits, see alignment E=1.6e-48 PF00557: Peptidase_M24" amino acids 169 to 398 (230 residues), 106 bits, see alignment E=4.5e-34 PF08644: SPT16" amino acids 520 to 670 (151 residues), 174.1 bits, see alignment E=4.5e-55 PF08512: Rtt106" amino acids 795 to 880 (86 residues), 55.8 bits, see alignment E=1e-18

Best Hits

Swiss-Prot: 52% identical to SPT16_SCHPO: FACT complex subunit spt16 (spt16) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: None (inferred from 52% identity to spo:SPBP8B7.19)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1009 amino acids)

>mRNA_5173 KOG1189 Global transcriptional regulator, cell division control protein (Rhodosporidium toruloides IFO0880)
LFSQAKEEDSAPLGDVEYVLVVAGNSDEENPYRKGSALQTHLLGYEFPSTLMLLGKRKVQ
FVVSASKAKLLQPLFKTPSGSDDKKVEVEILTRSKDEAENKKLFEQVIQTIGEGNKVGVL
PKDKMSGKFVTEWQNVLKGSGADLKEVDVGNGVSTLLAVKDSEELQNERNAAKMTNKLMS
HFSDVMSGYIDEGKKVTHEQLGEQIEAKLEDSKFWKNLKLGDDFETGFGDWCYSPIIQSG
GNYDLKSSAVTDDQRLKAGVILCSLGIRYKSYCSNVGRTFMIDPTKEQEKNYLFLIDLQK
YAIGELRDGVTCKDVYQKVVDKINADRPDLLQYFAKTAGFGMGIEFRDPAYPLSAKGTRQ
LKSDMVVALTLGFNNIPDGKNSHLHRYALSLIDTIQITKDGGKILSEGMKGKDDVMFYME
EEDKKPSRSAQKDAPARRNAAPTAVVKSKLRNENREIDADAINRRKQHQRELAARRQEEG
LDKYSGEGGTGGNNREKQWRRFESYVKDSQLPDAVASQKIVVDARRLTIILPINGFAVPF
HVNTLKSLVKQEEGDYTVLRFLFTTPGAISGKKEDTPFEDPNATFIRGLTYRSTDSFRFT
ELHKEINDLKRAAVKRENERKEMADVVEQDKLVEIKGKRPIRLTEVQLRPSFDGKRQAGD
VEIHSNGIRYQSSVKSEQRLDVLFSNIKHLFFQPCDNELIVILHIHLKSPIMIGKKKTKD
VQFFREVSDASFDETGNKKRKRNYHDEDELEAEQEERKRRADLNKYFKAFSDKIAEASNG
RVEVDIPFRELGFQGVPFRSNVLLQPTTDTLVFLTEPPFLVLTLNEIEIAHLERVQYGLK
NFDLVFVFRDFTRTPVHINTIPSNQLDTVKEWLDSVDIPFSEGPVNLNWQAIMKTVNDDP
YDFFKEGGWGFLSEKDNASDGSDESEEGSEFAASSAEDESDFEDESEFSDASDDDSGTAD
DLSDSGEDWSDAEARLEKKEKMKGRGDDSDDGRKKSKSAVKSKSSKGRK