Protein Info for mRNA_5185 in Rhodosporidium toruloides IFO0880

Name: 13553
Annotation: K01210 E3.2.1.58 glucan 1,3-beta-glucosidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 799 transmembrane" amino acids 48 to 70 (23 residues), see Phobius details PF00150: Cellulase" amino acids 213 to 372 (160 residues), 33 bits, see alignment E=2.3e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (799 amino acids)

>mRNA_5185 K01210 E3.2.1.58 glucan 1,3-beta-glucosidase (Rhodosporidium toruloides IFO0880)
MKEYGGEGSYDGAAGGGSGGILKKRYGAAGAGAGKGWWSRKSTSSKRWLICALVTLIILI
CAAIAVPLGVIKGRENKLAAETKANDNTNPKIPTGSHPVDWKTAAYGGNGSMVYLEDGSS
FMYNNSFGGWWVSIPFNDTARAQRDVPPLNEEWDYEKNLIMGVNIGGWLVLEPFIVPGMF
EPFNADNNSPNATNNAIDEWTLSVALGSNLTAALTEHYETFITEKDFAQIAGAGLNWVRI
PIGWWAIETWDGEPFLQGVAWTYFLKAIGWARKYGLRINLDLHAVPGSQNGYNHSGRQGS
INFLNGVMGIANAQRTLDYIRTLTEFISQPEYKNVVTMFSVLNEPYATTIGVDNLRSFYI
ETYNQMRSIGGTGAGNGPFITFHDGFVTMATNVSAGGWDGFLNGWDRVALDSHRYLCFSE
PNDWGLSYQASLPCNYWAQNMNISTNTFGVTMGGEWSLAINDCGKWINNVGNGYRYDGTY
YVPGNTTAPAFKSVGSCDPWNDWTTWSADTKNGLRLVAEAHMDALRHWFFWTWKTGVSKD
LGMIANPMWNYQLGLEQGWVPTNPRTAIGACPSLVSSNGFTMPYTSAPAPTLAPWMTGGS
GAGKISDQAMLTSYSVWPPSSIGAAASTGPYITPASNLPTYTQTASIVTLSAPPQPTSWP
AGYSSSANVGNGWAQASDQASFYTAVSGCSYPNPWSGAAVAAPTTPFCQSPAQPAATSSS
PSSANTAAAASSANTAAAVASANTAAAVASSASSDAAAASVDAVDPSARMKRRLKPTPSP
TIAFQPTPPPQPATTLGRQ