Protein Info for mRNA_5187 in Rhodosporidium toruloides IFO0880

Name: 13555
Annotation: KOG2533 Permease of the major facilitator superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 507 transmembrane" amino acids 54 to 72 (19 residues), see Phobius details amino acids 93 to 114 (22 residues), see Phobius details amino acids 124 to 145 (22 residues), see Phobius details amino acids 153 to 173 (21 residues), see Phobius details amino acids 184 to 206 (23 residues), see Phobius details amino acids 216 to 238 (23 residues), see Phobius details amino acids 292 to 316 (25 residues), see Phobius details amino acids 326 to 345 (20 residues), see Phobius details amino acids 352 to 372 (21 residues), see Phobius details amino acids 379 to 400 (22 residues), see Phobius details amino acids 413 to 432 (20 residues), see Phobius details amino acids 441 to 464 (24 residues), see Phobius details PF07690: MFS_1" amino acids 61 to 427 (367 residues), 101.9 bits, see alignment E=1.8e-33

Best Hits

Swiss-Prot: 36% identical to YAOI_SCHPO: Uncharacterized transporter C11D3.18C (SPAC11D3.18c) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: None (inferred from 49% identity to pcs:Pc13g10030)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (507 amino acids)

>mRNA_5187 KOG2533 Permease of the major facilitator superfamily (Rhodosporidium toruloides IFO0880)
MSDVEKHFPQEEKIAATEHLERVSSSGDGDGHVKLPSRMFTPAEEKKLYRKVDLRIMPIL
SLLYLLSFMDRGNIGNARLEGLEKDLKLTSQQYNTALSCFFVTYCLCEVPANLIMKKFRR
PSRWLGLCTVCWSIVMTLMGTVNSFGGLVATRLFLGITECGLFPGVILYISIWYPRHLSQ
TRVALFFGAATVAGAFSGLLAYGISFMAGVGGYNGWRWIFILEGLATFIVGVSAFFLISD
FPADCKWLTDEEREWLIYRKATDSSSVGEAEHVSKKHVWQALTDWQTYVGTAYYWGVVVP
LYAISLISPTLIAGFGTYTRAESQLMTLPIYVTACIFVLVTALLADRQKTRFGYMMLDLA
LCAIGLIINLTPAPTGVKYVGLIITACGAYGGLPTSVTWLTNNLSGQTKRATGSAFQIGI
GNLGALASTNVYRAKDKPHYYLGHGVMLGFTAIGLVAAPLYAYLLKRENEKKLAYQALPD
GHPEKKVWTAEEIREAGDRAPEFMYTI