Protein Info for mRNA_5188 in Rhodosporidium toruloides IFO0880

Name: 13556
Annotation: HMMPfam-Protein of unknown function (DUF3421)-PF11901,SMART-Repeats found in Drosophila proteins.-SM00696

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 163 PF11901: DUF3421" amino acids 40 to 151 (112 residues), 98.5 bits, see alignment E=1.3e-32

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (163 amino acids)

>mRNA_5188 HMMPfam-Protein of unknown function (DUF3421)-PF11901,SMART-Repeats found in Drosophila proteins.-SM00696 (Rhodosporidium toruloides IFO0880)
MSSPPAYTQSVPAAGLRVPCSSAQAFPDPSLTGPAPFRDLDGSPVFVCSVLMAGKSVHPA
KVTHGKAMYSYGGVEKHHEGRFDILPITEAMEWVPTSYGQIPPGRRPVEGGFEEGGQHLF
HAIMTIDGVRVPGKTGEHLHGANFPFGGGEIVQEAGYSILCWR