Protein Info for mRNA_5191 in Rhodosporidium toruloides IFO0880

Name: 13559
Annotation: KOG4826 C-8,7 sterol isomerase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 215 transmembrane" amino acids 16 to 38 (23 residues), see Phobius details amino acids 50 to 71 (22 residues), see Phobius details amino acids 108 to 127 (20 residues), see Phobius details amino acids 138 to 157 (20 residues), see Phobius details amino acids 177 to 196 (20 residues), see Phobius details PF05241: EBP" amino acids 20 to 203 (184 residues), 209.3 bits, see alignment E=1.6e-66

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (215 amino acids)

>mRNA_5191 KOG4826 C-8,7 sterol isomerase (Rhodosporidium toruloides IFO0880)
MTVHHAPPPTLLTQTTLLSLASTVALLALAVALARRLLPARRYADAAQRFTFVWLAFDAL
VHFTLEASFVVHSFPRPRTVNSGIGPFAALWREYALADTRWGTSDPTVVSIELITVFGAG
PLAAYCANGMRRSKNETWRLWIIILSVAELYGGWMTFAPEWITGSPSLNTSHPLYTWVYL
AFFNGLWVVIPLWLIWDSGRVILRALTTAEEAKAK