Protein Info for mRNA_5193 in Rhodosporidium toruloides IFO0880

Name: 13561
Annotation: KOG0253 Synaptic vesicle transporter SV2 (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 568 transmembrane" amino acids 86 to 107 (22 residues), see Phobius details amino acids 124 to 143 (20 residues), see Phobius details amino acids 150 to 166 (17 residues), see Phobius details amino acids 172 to 195 (24 residues), see Phobius details amino acids 207 to 230 (24 residues), see Phobius details amino acids 262 to 284 (23 residues), see Phobius details amino acids 378 to 403 (26 residues), see Phobius details amino acids 424 to 442 (19 residues), see Phobius details amino acids 453 to 476 (24 residues), see Phobius details amino acids 485 to 504 (20 residues), see Phobius details amino acids 514 to 533 (20 residues), see Phobius details amino acids 540 to 560 (21 residues), see Phobius details PF07690: MFS_1" amino acids 91 to 439 (349 residues), 81.5 bits, see alignment E=6e-27 amino acids 384 to 559 (176 residues), 35 bits, see alignment E=8e-13 PF00083: Sugar_tr" amino acids 120 to 565 (446 residues), 69.3 bits, see alignment E=3.3e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (568 amino acids)

>mRNA_5193 KOG0253 Synaptic vesicle transporter SV2 (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MPVEPTLTPLQKDTALHDSPIAPSFDADLKLSRSQAEQLENLKVSDDELVGGLTYQQLTL
YEKKSVLINREMDIMNRASFWKLGRYQLCGFGYFLDLCWAQAFGLVSGALQQELGVPNNR
IGDLSTAFSAGMTVGALFWGLAVDIIGRRWAFNMTCLISSVFGLLFASPSNFGALCFFAS
MIGLGVGGNIPIDATITLEFLPTNRRFLLCALSTFQPLGVVVASLVSWGLVPRYSCDTSY
KACSFPDRPCCTKSSNMGWRYTMIVLGCITLGIFFLRFVLFTFYESPKFLLAKGKDEEAI
NVLYKIAAFNRQPQPQLTIDDFRLLDKEYSERESITSDEPLSSGPRQFTTGEMAKIRVKQ
AVGQFAHLKGFFATKRMIWVSITLWIAYMSLFWSFSIAGGYLPLILRQKGIDTSAGLNET
YRNYVVVYLPGVTATILGSFLMEIPKIGRKWAMAFAAALMGTSLFLFSTISSFAAFTGMN
LLEYWAQSLYAALLYAFTPEAFPAPFRGSGSGIASTLGRLSSTVAPIAAGTIFSPRSNSV
LWLAGGAAFVSCLSVLCLPYDTRGRHTF