Protein Info for mRNA_5202 in Rhodosporidium toruloides IFO0880

Name: 13570
Annotation: K02874 RP-L14, MRPL14, rplN large subunit ribosomal protein L14

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 132 TIGR01067: ribosomal protein uL14" amino acids 1 to 132 (132 residues), 124.1 bits, see alignment E=1.5e-40 PF00238: Ribosomal_L14" amino acids 1 to 132 (132 residues), 146.3 bits, see alignment E=2.3e-47

Best Hits

Swiss-Prot: 56% identical to RM38_SCHPO: 54S ribosomal protein L38, mitochondrial (mrpl38) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: None (inferred from 68% identity to uma:UM01126.1)

Predicted SEED Role

"LSU ribosomal protein L14p (L23e)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (132 amino acids)

>mRNA_5202 K02874 RP-L14, MRPL14, rplN large subunit ribosomal protein L14 (Rhodosporidium toruloides IFO0880)
MLGLKATMAIIDNSGALVAECVNVLKVKTGHGMARIGDEIVVVVKKARGVAAQTSQSAAN
KVRKGDVRRAVVVRTKYPTRRPDGRYIRFDDNAAVLINHKKEMIGNRIGSVVAAELRAKG
WGKIVSLAPKVV