Protein Info for mRNA_5203 in Rhodosporidium toruloides IFO0880

Name: 13571
Annotation: K06709 KDM4, JMJD2, JHDM3 jumonji domain-containing protein 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1277 PF02375: JmjN" amino acids 210 to 246 (37 residues), 44.8 bits, see alignment (E = 2e-15) PF02373: JmjC" amino acids 513 to 629 (117 residues), 134.1 bits, see alignment E=6.2e-43 PF13832: zf-HC5HC2H_2" amino acids 882 to 961 (80 residues), 57.2 bits, see alignment 3.6e-19 PF13771: zf-HC5HC2H" amino acids 888 to 962 (75 residues), 61.6 bits, see alignment 1.4e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1277 amino acids)

>mRNA_5203 K06709 KDM4, JMJD2, JHDM3 jumonji domain-containing protein 2 (Rhodosporidium toruloides IFO0880)
MTGAAEPSAQAAHATKPADPAATLPSPVQDPLPAPASSSRTDSHAATAQSSDLSSLENSS
SAEDSVRVTARPARKVGKTASPALRATPMQQLPSSDMLPKLPGKGAAKKEDRFPSPPQAP
PTPAASHSSPEMPKIPLPSFVKEDDLSSESDSSSDEDSYGEEKPPRPPRFSKSTGLPRPR
PSYYYDADYDPGTTAGKKKRHRRGGFKGVPVFEPSMEDFAANGGFYGYVKRIEKYGLRSG
IVKVVPPKEWSDSLKPVDQPLRDIRLRDAIEQHIFGSQGVYRVANEAKSRVWSPLQWKEM
SLRPKWDGPDLLAEEKKGDRSERRAVSERVAKRQNGEEDGGSARKKGKGRQVEEEVESDE
AEEADEEDAALPKGRRTPARKSKVDRPAKASTSKAKKEKSPSEEAPDSAAKKKRLSVLQR
NETTEEEWKDFVEHLYELPHGMTKADYTVERMRDFERRYWRTLTFGEPPMYGADMAGSLF
DDSTTAWNVAKLGDLLPKLAPQDCQIPGVVTPYLYFGMWRATFAWHVEDADLYSINYIHF
GAPKFWYSVPQEQAERFERVMEGLFPTDRSKCSQFLRHKAFLASPKILANHGITLNRCVQ
LPGEFILTYPKGYHSGFNLGFNCAESINFATERWLPLGKVTKHCHCVEDSVSIDVNIWLR
QAAKEEHLRRGDPWPYDELEEQALLAQIEAEERAEKERIAAAAAAAAAAARKRASTAADG
QPRKKPRPATTHLTPLQQRSLCLTPADPGAVGPSVVTMTILEALQSVDILPHIRQQLALL
VQRSNGQYTHSSHIRLQVVPHPAPHLIAPPAPPPQPRSNPYGSSAYHYPQQAVQPKPANS
SAASTASAPPAPPPKPDFPCALCPDLSTEGLVRVGEPGMKNKKKLEAHRICVMFTPATWI
DVDPETNEEIVRGFSKIEKARWKLKCQLCTETHGTKVQCTKGKCTKAFHVTCAVHDDAGV
HLDATVPDDAHEGQEVSILDQARQKTPTANVPTEEGFLPPASPSKQPNNDLIHLTVLCRT
HNPDYQRRESERRAAELRTKVEALKSGDRIRVKTNNGNYDVTFASVDKEKEMVAYAFDDG
KRGSVKWKNILWPESPEVLRKKEEAALRAQQEKAAILDRPAYKAPTKRANPVTVVPLTPS
APPPNYGYQYQPQYAYYNGPAGQPSSIPYGYAQPPHLGYAYGPPAQPYQYSYPSNAPPPA
RYPPPPGPYGPAYQQHSTPAPPTYPGPAASLSAYPSQQVPQQQQQRPLPPFSSFASMTAH
TPPQPTAPTNAAPSASA