Protein Info for mRNA_5212 in Rhodosporidium toruloides IFO0880

Name: 13580
Annotation: K00624 E2.3.1.7 carnitine O-acetyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 709 PF00755: Carn_acyltransf" amino acids 31 to 666 (636 residues), 691 bits, see alignment E=7.7e-212

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (709 amino acids)

>mRNA_5212 K00624 E2.3.1.7 carnitine O-acetyltransferase (Rhodosporidium toruloides IFO0880)
MPSRAQTVESVTLVEGHAFPTGKTFAGQDSLPKLPVPPLDDTMKRYVKALEGLQSSSEHE
RTKEVVDEFLKKDGPKLHQRLVDYASNRASYIEEWWTESYLSHADSVVLSLNPFFILEDD
PTPARGNQLMRATSLILASLDFIHDLRTGELEPDSFRGTPLDMSQYTKLFGTSRIPTKTG
CKMQIDPESRHIVVLARGQLYWFDVLDSKNRPAMTERALLANLTAIAADAGRTPPNQVAQ
SALGVLTTERRTIWAHHRSHLMQNDGNAMCLDVVDKALFVVCLDDTSPETPSEMCTNMLC
GTYKLDKGVQVGTCTNRWYDKLQIIVAANGAAGVNFEHSGVDGHTVLRFVGDIYTELILR
FARSINSASGTLFKAKLSPWAKGGPGKKQPVEGEQPEVIDTEPKKLEWVMTPELKLAVRF
AETRLSDLICQNEVVALEFDAYGKNTITQHGFSPDAFVQMAYQAAYFSLYGRTESTYEPA
MTKAFLHGRTEAIRTVTPECVDFVKTFCSEASPRDKIAALRKACKAHTELTKACSKGLGQ
DRILYAMYCLAQQAQKRERAMSGSSIANGDGSSEEESEDSEISEETLARIPALFKDPGYS
TLGHSTLSTSNCGNDCLRAFGFGPVVADGLGIGYIIKPDSISICASSKHRQTARFLDALK
AYFVEVQRMLKQLHQESNRNPNSRFVDPILGEIGASRSLFHRYLPLDFV