Protein Info for mRNA_5216 in Rhodosporidium toruloides IFO0880

Name: 13584
Annotation: K04648 DCTN1 dynactin 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1412 PF01302: CAP_GLY" amino acids 8 to 70 (63 residues), 77 bits, see alignment (E = 9.2e-26) PF12455: Dynactin" amino acids 725 to 1014 (290 residues), 313.8 bits, see alignment E=1.1e-97

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1412 amino acids)

>mRNA_5216 K04648 DCTN1 dynactin 1 (Rhodosporidium toruloides IFO0880)
MAAVIPLGARVQVTAGVGLVRFVGQTAFAAGKWVGIELDGPGGKNDGSVGETRYFSCTPG
YGVFVRPSMVTVLDTDESSSVSGETTEFKTPPVPSSSRPSSRTSTRPASTLGSRPPSRPV
GSAAPRLSAVPPYPAPSTLRRPPSVASSTASTSNPPRAASPAKPSSRASLASRPPSSAST
AAPTAERRTSMLPPPTPRSRPAPSSTGIVPPSPRSGLTRPPSAAAASKPPPANFAPPAPS
VASPASQPTSRTARLPGSRLTAPGSAVRPGLTDARNVASPSALKSPSVGLRRQLSTGSAS
SASSSPAPSALGHGGMRRSGSLASVSSAGMRRQVSGGAESSRAGSVAGTEIEEEGEEEQD
GVRAVSPVKPPSAKAAEEPSDPFSLKAADSRRTLEATVPQRVYDELAAKLLIVERRRAED
LDKLRELDRLREEADEWSRVREKTKARVAELAGEVRELRKENKDLAVERDSAQTKFDDLQ
EQVEHSLLDKEIAESELEEATARLKELEERVGELEIEVEVVREENARLEGLGDAEIARAA
EGGGEGEEGTAAPSSLAFRQLEKQNARLKDALIKMRDLTSESEANMKRKIESLEKELDLS
ADLQSDLDNMAVELEEAEAKIEDLEAQLDIAAEAQDMLEELTERNMKLHDDNEVLKADVE
ELEALKEIADELEETHLETEKQMQGELDLKDMQLQDLRRRNESLETACLDYEGTISQFRE
VVITLQGDLERLREHQASQADESQTLSSQSQAMLNLNLKLQSSVLKSQVKAIDLELRKLE
AQQASAHLDIVKPYLLPSFFESDSDAVEALLFFERVAYKVDLLDTFIEQNHAVGDALDGV
VPENLAGVCETRAKLAHFAALNRRFAAHLRRCQPDTFLKMGRVYREVAPTERRIDAFIDA
LRKEELKEVECGKEVDGLIAQAEHLAETHLQDSDPMLDLAERETAFVVALDHDFDTIAVA
AGFAKQTIATLAKDPDVVVIMGDGNMDDALFKPLQNLVNGSRNAKVLTKKLLRRFEDLGA
SSTALSLDLAQGFETLAFNSSAIASALLKLASDVQSYCAEVRSSKQPLELTTLHTIAKEI
AAVELGKQSVRPLEEVNSLLSQLSQNISTTVTTAIDPDHVVKLSFEAPWHARVAELQSTA
AINVDAERKVVKLNEEMRDIARDLRSKEQEYQESLVKIELMEKRLEGVKKQAEAMAQLEA
ELAKSRKQERTYEEANEVLQRDLDKMEQELDKLKQTAAVTEKQGTSSGNGLDSIAYEGNM
ETSYLVEQITSLRSAIRCLRGENAYLKSQDLLGDLNKLPSYELPPTPPLTPEPHEPSDDS
FRLPPNPKSLAQSFSMRSKQLLREARLVSATPRLVDVSHVAPLGADGKKAWHPVRRDPRN
QLWAEKERARVLERKVKLLWEERPGLAGRVGM