Protein Info for mRNA_5235 in Rhodosporidium toruloides IFO0880

Name: 13603
Annotation: KOG1178 Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1518 transmembrane" amino acids 241 to 263 (23 residues), see Phobius details amino acids 282 to 301 (20 residues), see Phobius details PF00501: AMP-binding" amino acids 216 to 688 (473 residues), 220.2 bits, see alignment E=6.1e-69 PF00550: PP-binding" amino acids 858 to 923 (66 residues), 25.9 bits, see alignment (E = 1.5e-09) amino acids 1448 to 1513 (66 residues), 45.5 bits, see alignment (E = 1.2e-15) PF00668: Condensation" amino acids 973 to 1410 (438 residues), 130 bits, see alignment E=1.6e-41

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1518 amino acids)

>mRNA_5235 KOG1178 Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes (Rhodosporidium toruloides IFO0880)
MPPLDYPRLPTHYRFDPASPSLRSISILFPDSLRDGGLRQALRVAAGLALAAHAGEERYE
FRVEGGEVVEGEVNREETVGWTLERVEETMEKKRGEDGVRLTVELKDDEVAAGVRDAPAT
PLHLVVDVSSSKNPSATLSFDSSLIPELQARWFLSHVVTGTRAILQASRSTRISTISLAP
SDELAIFGQYCTCPSTIHEPDAYPSSVKTLPDFFLHAAEQYPDDPALHFIPDVTSPQADS
LVLSFSQLAYLARFLASHILLSLDASQLDGQHVLPVVLDKSPAMIISLLAASLAGFGYLA
LEPSFPEGRKRGICEELAEKGMLASAAVVQSADGEKQKWESWQNDEGEEAFSSVIDPQTV
LAPLLNFLATSSSTSITDLASHFPLPDLSSVGGLPTLKEDGLAYVIYTSGTTGKPKGIMV
EHRNVAAFLRNYRGVFGRARGERVLQFPSYSFDVSVMNIWDTLAHGSTVCITTPASLFSS
LADTILALDCTLADLTPTIAALLFEHEEAQPRAGESVEQAWRRAGFRIKQVNTGGEKVDK
SVREKWRERGVRVCIDYGPTETTVGVISNQSLAPSPPPPFSLPIGKPTGNTRIYILPSHS
PDALTPLPLGCIGEICVLGPQVTRGYVRQELNKGVFVELNGDERIGEKGERLYRTGDLGR
WVVAGWEEEGEKEGWIECLGRKDGQVKVNGLRIEVGEIEENLSSKADPAIVRGIVDKVDA
PGIGTALVAFLELSPSFVSDGTASPASTRGQHHSHSAGSVSILPLSTSPRFSTLCESLKT
RLGDKLPTYMVPRYWLAVNRIPTQGMGKADRKTLRGLAEEWDWQAAARSRRAKGTNGSGE
EEVAERHYTRSPHFDAARRAWAKVLRLQDDPAGDNIADEDAFMKLGGDSIRFMKLVSVIR
SEGYPGVAFRDLVEAATLADCAAVLERKGGAGTQTNGHRIEQEYRPFSLIPEDQKESLFA
ELDSASLPRSRISDVYPTAPAQDALLAPSFDSPCGHYYAQAVYAVGVSEAKLPLERLQHG
IEKLVRRHDVLRGVFFVSDTLGRTVSILLKPEDEEVKHRCRIEEIQVGEAKELDAVVSSW
LRQDRHAHSFDWGRLSLSFALFSLPDRTRKLAWSMHHAMSDGWTLELLTLDLRNLCFDIP
IPDRLSFGAVASWWLSETTPLQDTIAFWRSYLDGAKPLGWPSQDPLRGEMLATTGAAIQH
WSGELDALSQRSGITPAIASRLAILVALQHHTGSSDVNVGIVRSGRDIDVADADEIIGPC
VSVLPSRIRFDPNSSLLSLAKAEAEADRRARVHQHVTLSQLARFCDLPGRADLFDILVTF
QSLAERDPAVENAALWPVRQPPERIHMPTNYTLSFEITPEMHNKDKLELACFFDERIIEK
SEVDEVLKTVGNVLDYLTTAPCTKLRDVKLGEGATPARHLSKQANGTARPSPVNGSKKLD
PALSATVQRLATEWASVLRVLEADIGPHDSFASFGGDSIATMRLAVRLSKAGLAIPTQAL
AKLPTLADQADWLRRKET