Protein Info for mRNA_5243 in Rhodosporidium toruloides IFO0880

Name: 13611
Annotation: KOG1601 GATA-4/5/6 transcription factors

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1127 PF13426: PAS_9" amino acids 374 to 477 (104 residues), 52.1 bits, see alignment E=2.1e-17 amino acids 655 to 732 (78 residues), 16.8 bits, see alignment 2.1e-06 amino acids 773 to 825 (53 residues), 10.1 bits, see alignment 0.00026 TIGR00229: PAS domain S-box protein" amino acids 637 to 749 (113 residues), 29.3 bits, see alignment E=4.1e-11 PF00989: PAS" amino acids 644 to 750 (107 residues), 30.1 bits, see alignment E=1.3e-10 PF14598: PAS_11" amino acids 651 to 740 (90 residues), 31.4 bits, see alignment E=5.3e-11 PF08447: PAS_3" amino acids 662 to 742 (81 residues), 46.9 bits, see alignment 8.7e-16 PF00320: GATA" amino acids 1015 to 1047 (33 residues), 53.7 bits, see alignment (E = 3.7e-18)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1127 amino acids)

>mRNA_5243 KOG1601 GATA-4/5/6 transcription factors (Rhodosporidium toruloides IFO0880)
MNSHAADSYWSFQAAVDDTDAGTGAGGYSPAPTSLAGSSVPQARPLHRTVSEEVQQALGQ
TLGMSSAGGGVGSSRQGGQSSYGGFDPMDHARLSPSAFDPSNFSRQFTMPKFASGGPSDP
FGLGVGITDPPSGNPGDAISPMPFDFNFGGPQTPRFDGLTSASPFYSSNNQAFSASIAPQ
QQPQQYQQPQHQRQQQTLSPTSYGGQNSLNAVASTSQVPYAPAQQPQQQPSMSRSLAASP
PSAPATTLAASVASASSALRIPTTAEIESPIYAPYGSSVISINSTPNAAYKLPSLAMNLP
PSQPPTVPFNPTAMGLPAPPPQGSSSNFAGLYSSSGFDMLGVLARVAARPNPQIHIGPVD
SSCAFAVVDARRWDQPLVFVSDTFVKMTGYTNEEIIGRNCRFLQTPGGGTVQGAPRKYTD
GNAAWHMRQHIQAGKESQSSLINYTKAGRPFINLVTIIPICWDTEEIAYFVGFQVDLVDQ
PNAILDRMRDGTYVVNYSLVGNAYNNAIIRNPSMITSTTDTSDSQKTVSMQTIEAGAFVD
GLDEWAMADDQDESPPVPQQPQLPQQQQVQQNGQQSNGARRNGGSISASTTSASYTKPSP
GAQMGGAGGEPSMRTDDELLDIVASRGIGSLDLEVDKRAFHKLLLGQADDFVHVLSLKGS
LLYCSPAVAKVLEYEASELVGATLSSLCHPSDVVPVMRQLKDASSIQNPHVKLLYRIRRK
HSGYVWIEATGKLHIEPGKGRKCVIAVARPRDVLQMNWNELRQNGGLGDTEFWVKINPRG
TLLTATLGTQAVLGYLPDDLVGTSLFDIALPEYRQSLEATIQQAQLGVPASLQYKVKTRR
GVVDVVTKFYPRHPEPLDPTIPQIASGPSHIALIAQTNELSSEERKHKGPFGLNAPVYSS
PAGRSPAISDVESSASGSGSSSRESSAGAFQSTFKTLTHPSSVSDNVFDELETRRPTSWQ
FELHQLQNLNKKLRDEKEYLLARRRKRGSVYSEKSRKASSDSGSKASSSNTGRICQNCGR
TDSPEWRSGPNGNKTLCNACGLRWAKSQKQAAGGSGGSINPQSFSSAMSFTSNGSSGSGS
PTGGLGSSFQPMTISPSHSNMQSPQHSFSGSMPKLEEDLTSAWAQQL