Protein Info for mRNA_5245 in Rhodosporidium toruloides IFO0880

Name: 13613
Annotation: KOG2887 Membrane protein involved in ER to Golgi transport

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 163 transmembrane" amino acids 42 to 64 (23 residues), see Phobius details amino acids 71 to 93 (23 residues), see Phobius details amino acids 105 to 125 (21 residues), see Phobius details amino acids 131 to 152 (22 residues), see Phobius details PF04178: Got1" amino acids 53 to 160 (108 residues), 93.7 bits, see alignment E=5e-31

Best Hits

KEGG orthology group: None (inferred from 53% identity to scm:SCHCODRAFT_105317)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (163 amino acids)

>mRNA_5245 KOG2887 Membrane protein involved in ER to Golgi transport (Rhodosporidium toruloides IFO0880)
MSDLWSKWNPLSGSEAAGIVDNMTTQDESAFKFLDLTRTQRLYGFGICVAVGFALSLLGA
IFFALGQVALFATLYVVGVVASLVGTGFLLGFMKQLRMMWDPVRRYAAAIFLLCIALTFV
FAFVISIDVLVIVFAVCTYLAYAWYSLSYIPYARTLAKKMWPF