Protein Info for mRNA_5254 in Rhodosporidium toruloides IFO0880

Name: 13622
Annotation: HMMPfam-10 TM Acyl Transferase domain found in Cas1p-PF07779,HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 845 transmembrane" amino acids 22 to 41 (20 residues), see Phobius details amino acids 322 to 341 (20 residues), see Phobius details amino acids 360 to 378 (19 residues), see Phobius details amino acids 390 to 410 (21 residues), see Phobius details amino acids 430 to 448 (19 residues), see Phobius details amino acids 454 to 474 (21 residues), see Phobius details amino acids 481 to 501 (21 residues), see Phobius details amino acids 507 to 528 (22 residues), see Phobius details amino acids 537 to 556 (20 residues), see Phobius details amino acids 586 to 605 (20 residues), see Phobius details amino acids 618 to 636 (19 residues), see Phobius details amino acids 648 to 666 (19 residues), see Phobius details amino acids 678 to 699 (22 residues), see Phobius details amino acids 720 to 748 (29 residues), see Phobius details amino acids 825 to 843 (19 residues), see Phobius details PF07779: Cas1_AcylT" amino acids 308 to 747 (440 residues), 436.7 bits, see alignment E=6.6e-135

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (845 amino acids)

>mRNA_5254 HMMPfam-10 TM Acyl Transferase domain found in Cas1p-PF07779,HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839 (Rhodosporidium toruloides IFO0880)
MAANGSGADKPAPKKEWFPTRSFHGSLIALVLALAVFRFFIQDSGDRHHCKALLNEGRWL
DDKHTSWQPDGCMLHPYTPKQVGQCLEGRSVVFIGDSTVRQVFYATVKHADKNIDTKADK
HTDRTFMAGGIQFSFYWDPFLNGSRATQLFEGTLGSATGHGTPTLAVIGSGIWYLRHPNS
GGIDVWDRRIDTLFAATRPSLPAIADEVILLPVENAIESRLSPERAATVHHDDIQKMNEL
LDAKLRDAATSPGSGTGGVAVPRSFNRVIEGLDDETVDGLHFSDTISKVQASILLNLRCN
DALPKKFPFDKTCCFQYPTPNWVQALLLLVLVAYGPAGLYFYSRSDTAPIVYRFFPDQKY
LLPFTIFGFSTTLLFVADRTNLFLKENKQYDALTFAVLCLLTVVAGVVTMKPPEKDLGFL
NRDQTDEWKGWMQIAILIYHYLGASKISGIYNPIRVLVAAYLFMTGYGHLSFFLKKADFG
FARVANILVRLNLLTVVLAYLMDTDYLSYYFSPLVTIWFGIIWVTLWAGHKYNDKPAFLI
TKLVVAACLTAAFFEIPGPLEKTFELINTVFATSWNAAEWRFRQTLDMWIVWVGAFTAYA
FIKIKEYRVTDDLRWPSWQRWTIIASAVTMAGYFVFELTRESKFVYNAYHPYVSILPVLA
WCVLRNATPCLRSTSSKFFIFFGQCSLETFIIQFHLFIAGDTRGIIMMIPGGAWLRPVNF
IVTSLVFVFVSNQVAIATGVLTSIICYVPKPSSSSSSARLPSSTRESIPSLPSSATIASS
HPASGEYVALSTMADGDKGMGDGLAAMDARDGWASKVGMVVVTDLRVRFAAILAGLWVLN
VVYPA