Protein Info for mRNA_5255 in Rhodosporidium toruloides IFO0880

Name: 13623
Annotation: K12604 CNOT1, NOT1 CCR4-NOT transcription complex subunit 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2001 transmembrane" amino acids 1583 to 1592 (10 residues), see Phobius details amino acids 1609 to 1632 (24 residues), see Phobius details amino acids 1645 to 1664 (20 residues), see Phobius details PF16418: CNOT1_HEAT" amino acids 278 to 424 (147 residues), 145 bits, see alignment 4.7e-46 PF16417: CNOT1_TTP_bind" amino acids 463 to 625 (163 residues), 183.5 bits, see alignment E=6.1e-58 PF16415: CNOT1_CAF1_bind" amino acids 668 to 886 (219 residues), 331.5 bits, see alignment E=6e-103 PF12842: DUF3819" amino acids 1014 to 1157 (144 residues), 189 bits, see alignment 1.1e-59 PF04054: Not1" amino acids 1614 to 1962 (349 residues), 327.4 bits, see alignment E=2.7e-101

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2001 amino acids)

>mRNA_5255 K12604 CNOT1, NOT1 CCR4-NOT transcription complex subunit 1 (Rhodosporidium toruloides IFO0880)
MSILSRFAPVPALSTPDLVRNVMSRYGGLSSEGSDVGSAEMRVAQQLFELIDLATKEGDN
GRGVDVASWVRAVHESQPALRWGDVVRAYDSPMRALPDHFGIRAFATLLQVSPAPQPTAE
DPRANPPQASGLGLVSAPGGTSAISGLWTQWANPLLQFSLIDRLVFLASSPATPPGTSAS
TEPHLNLANLASVHKVVTVDDAAGSSPTIKALAQSVQNSPWNAQEVTTTLVRLGGDASNA
ELAGRVHELLDRGCKSNPELVLVALTQAEKPWNAIHAELTARLLSTFLAGHPSHQLVFLR
LSQIDRQFLFAALRDFYAESEMNVTRIIDIAQDLKMLDQILELRPFVLALDLAALASRRE
YLNLDKWLTGQIQQHGGQLVRATLEFVGHKVQHELRRQELDHPPEPTTLALNAATIAIFM
RVLRAHHELFTGNDVELFKEVRTQCLQLHPRLMNFSPKNSESEPGMAVTSFSPEIEAECD
ALYKRMYEQEISVDKVVTALRQAKDSDNQHDHEFFACFLHGLFDEHRFFSTYPPKELALT
ASLFGDLIQYHLIDFVPLGIAVRYVLDALRNPPDSNWFRFGIQALARFQSRLSEWPQLAH
SILSIPHVQQLHPEVANTAREALLQREGGENGSSLGGLDVGPEQEPPREPERLPFSAIHV
EESGGDPEAPDEQTSDKILFIVNNLAPSNFETKVKDMVSRMEPIHFAWFAHYLVAQRVSI
EPNNHQLYQQFLEALKMPNLVKRVLHETFVKLATLLNSDKTVQSSTERTLLKNLGSWLGG
LTLAKDKPIRHSNIAFKQLLIEGYDSNRLIVAIPFVCKVLEQCSKSRVFRPPNPWLMAIL
RLLVELYQFAELKLNLKFEIEVLCKSLDVDLKDVEPTEILRNRSKELAAQQAAAAQAQVQ
AQAAVLAGQQGGLPQTSVELALANLAQQQQQAGAAGHLGQDVDEHGLRTGFASAAHHALP
AAGAPGEAARLPPMLGVNQPGYSLSLQDTVSAALQNLPSLVVFNSQLPMFTSNPALKRLI
CLAIDRAVREIIAPVVERSVTIAGISTRELTMKDFAMEGDENNMATAAHLMVQNLAGSLA
LVTCKEPLRLSMIAHARTLLLQNGFTDDSLPEQAIQVIVAENLDLACSVVEKVAMEKAVL
EVDEGLAPAYLARRSHRERSREAFWDTAAMAASHYSGMLPDPLRLKLGGLSPQQLQVYED
FARLRTLPPAADGRNGALYAESPAMAAANVPQAAAAAAAAAAVVADAGVLTAPQAMEKFA
ALLAELEQALAAESVPQLAGVGQESDLRRIVQQIPLVAASSASRDDTVLACSQKVVQLLY
RSEGALARDAYVFLLDRLCAISPRVAKEVTDWLVYAEDERKFNVPVTVALLQARFINVAD
LDLQLAKFAVREFRATVVDFVAGVVSACLAEVPPVATREQFANSLEALNQGVRQGKATDA
ARKLLDDVQSRGTTSVRELSPSNLTSAEDAAVREQLTLCFAEWVRLYQQSHNIEKAFVDF
VVQLQKQGILKGEEISSLFFRVCTEVSIDSYIKNKAAGGTPATGIFQPVDAFARLITFMI
KYHADPTGANNDKAKVHYMNKVLSIVVLVLANSHEELGIHFQAKPFFRFFSSLLCNLAAI
ESHLGAAYSTILIGLSHSLNTCQPSIFPAFAFSWISLVTHRFFMPKLLQMTESRDGWNAF
LRQLVSLLRFLAPHLRQGKLSEVVRTLYIGTERLLLVLLKDFPDFVAQAAPALVDVLPSN
AVQMTNLVLSAFPVQVATRLPDPLQAGLDLESLPEAQKAPAFLADYTAALTVSGILPVLD
QYLVSGEPADFVSMVLARLDRPNAKVERGEPAVNVPLVNSLVLRLGATAINQHKAQKGQA
GFDASSESFKTLRQLVERATPETRYYLLLAVVNQLRFVSSHTAWFSKALLAIFAEAGEDD
ATKETSRVSEAILRVVLERSLAARPVPMGVQHALSQLLRDHASTVEKVLSRLPNDDAGAR
ALVSHFARLVQSPPAGPPAAA