Protein Info for mRNA_5268 in Rhodosporidium toruloides IFO0880

Name: 13636
Annotation: K10389 TUBG tubulin gamma

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 505 PF00091: Tubulin" amino acids 4 to 242 (239 residues), 209.2 bits, see alignment E=7.5e-66 PF03953: Tubulin_C" amino acids 291 to 436 (146 residues), 130 bits, see alignment E=6.2e-42

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (505 amino acids)

>mRNA_5268 K10389 TUBG tubulin gamma (Rhodosporidium toruloides IFO0880)
MPRELLTVSVGQAGNSISGEFWAQLCAEHGISPDGHLEDYPYAPSSTSLGDSQTPFASTS
SLANQSQPFHDRKDVFFYQADDERYIPRAVMIDLEPRVLNRIKSESKYKNLYNPENFYSS
PEGGGAGNNFARGHGYGDSTWNEISEMLEREAEGSDSLEGIMLLHSIAGGTGAGLGSYIL
ERLSDVFPKKLIQTNSVFPNADTGNSDLVVQPYNSILTMQRLAEHADSVVVLDNKALSSI
CQERLHEDQASMVQINQLCSTVMAASSQTLRYPGYMNNDLVSMVASLIPTPRCHFLTTSY
TPFMSDKAEQARAVRKTTVLDVMRRLLQPKNRLVSTSFASDAKSNCYISTMNIIQGDDLD
PKDVHKSLIRIRERSLAQFIPWGPASIQVALTKPSPYVKARAALRALEANAPPPPPRVSG
CMIANHTGIASLFARQLQQFDSLFNRKAFLTEFQRENMFENGLEPLSEARAVVKELIEEY
RAAEKISYVDYGAPASLDSDPRQRP