Protein Info for mRNA_5271 in Rhodosporidium toruloides IFO0880

Name: 13639
Annotation: K11841 USP10, UBP3 ubiquitin carboxyl-terminal hydrolase 10

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 974 transmembrane" amino acids 544 to 562 (19 residues), see Phobius details PF00443: UCH" amino acids 531 to 967 (437 residues), 134.5 bits, see alignment E=5e-43 PF13423: UCH_1" amino acids 532 to 920 (389 residues), 32.3 bits, see alignment E=8.4e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (974 amino acids)

>mRNA_5271 K11841 USP10, UBP3 ubiquitin carboxyl-terminal hydrolase 10 (Rhodosporidium toruloides IFO0880)
MATPTAGPSRQATPSHPSTSANGRVSTLNPHSASFSFLQPDSVPSTSAAVHHPPPAPFPY
EQHPFPISSFSPPHPNGMYGSPGPYSPYPISSSNGMAGGSGMHGAGGPPPPPPWAAAGKG
LGGGGGNGGWNAGPPPFAQHGMHQPTHPHGQPPYFQHHGPPPPPAPSRIPPPPVPPPGSM
ATNGILFPLPAPQHPPAVAAAAGYPPPGASGLPHSHVHPPSHPPHPLLPPFSPQRPPPPS
SSAPRLIPAPSLPVSPASPLPPPSTSPSVVPPSLLPEAVVPSPSPSSMKAASQEGESKGE
SEAVATAPPPRRLGIRRRKDHLPAPQDAQPFSFAPHLRVPAGFGGKFRTVDSLSSSASAT
GRSEKGTPGRDKSATASSATSSAPSTPKTQSQTPLSPPTTTASTPAQAPREPATPKQGGS
LLPAVAPAPASPAVTSPSTTTGPNATEAATSGSSAPVSPKSPAAPPVKRSWADLVRPPPG
AAPPVVPNGITPISASTTLPGAAHPGVPETLLGLLSLPPSHIHQPQAPNPRGLINNGNLC
FANATLQALVYCGAFWNLLGLIERGTKKDLREAMAGKTEKDKSERSAVEAMIAFLAEFRT
SVSSTSPAFDPAQNTSSSANADASTSSGTSTPKPPFNNNVHPPISSASSVASSSSATSQP
APLSPTPIHDSLRHNPRFDAMRRGTQEDAEEFLGFFLETLHEEVVKIMELEEKKEQGKGK
GKAISQAGGDEGWEEVGSKGRVATTRTTETKESPITRIFGGKLRSVLRCPGQKDSVTIEP
FQRLQLDIQPDHVLSIEDALVQLTAPESLPDYVTSRGRTLDATKQVFLDALPPVLILHLK
RFLYDEVGGVQKSTKKVAYGTELAIDERVMSAPLKAQVGRAGAKYELFGVVYHHGLHASG
GHYTVAVRRGYHSPTWLELDDTYMRTLDAKEVAVRPQSAKARRWETASSSKLFDDDADQK
NAYLLLYAKVDEEK