Protein Info for mRNA_5280 in Rhodosporidium toruloides IFO0880

Name: 13648
Annotation: KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 332 PF00503: G-alpha" amino acids 4 to 318 (315 residues), 314.7 bits, see alignment E=1.3e-97 PF04670: Gtr1_RagA" amino acids 4 to 249 (246 residues), 22.5 bits, see alignment E=1e-08 PF00025: Arf" amino acids 166 to 249 (84 residues), 32.8 bits, see alignment E=7.4e-12

Best Hits

KEGG orthology group: K04636, guanine nucleotide binding protein (G protein), alpha 14 (inferred from 40% identity to ecb:100063170)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (332 amino acids)

>mRNA_5280 KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily (Rhodosporidium toruloides IFO0880)
MVTKCLLLGPGESGKSTIVKQMRLVYSSPYTPTELSSFRETIFSNLLQSAQSLLSSFSAL
KIRLPADVKDEVKWLREVEETEEIVDLETGGLKEEAASAFGRLWEAEGTKEAMRRSAEFQ
LNDSAEYFFTHLARIASPSYLPTEEDVLRTRVRSIGVVEQTFEVLKGRKLRVVDVGGQRS
ERKKWVHQFENIGMLIFVVAVSEYNQTLFEDSRQNRLDESLELWEMISASRWFRRSTFVL
FLNKTDIFERKILSGFAPLAASVPNYRGPPSNVPAAKSYMLDTFTALYKQHTPERALFAH
FTQATDKVSTQVVLGAVMTGVLTSTLQEMGLL