Protein Info for mRNA_5303 in Rhodosporidium toruloides IFO0880

Name: 13671
Annotation: K17608 STRN1_3_4 striatin 1/3/4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1088 PF08232: Striatin" amino acids 57 to 274 (218 residues), 164.9 bits, see alignment E=3.4e-52 PF00400: WD40" amino acids 734 to 770 (37 residues), 17.3 bits, see alignment (E = 1.1e-06) amino acids 784 to 824 (41 residues), 17.2 bits, see alignment (E = 1.2e-06) amino acids 955 to 989 (35 residues), 13 bits, see alignment (E = 2.5e-05) amino acids 993 to 1033 (41 residues), 23.3 bits, see alignment (E = 1.3e-08) amino acids 1047 to 1086 (40 residues), 16.2 bits, see alignment (E = 2.5e-06)

Best Hits

Predicted SEED Role

"High-affnity carbon uptake protein Hat/HatR" in subsystem CO2 uptake, carboxysome or Carboxysome

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1088 amino acids)

>mRNA_5303 K17608 STRN1_3_4 striatin 1/3/4 (Rhodosporidium toruloides IFO0880)
MLPWNPPSSFSLGNEQRFGNDASTSQPQPPSAQQSPQQQAPPLPPPPPQQQSYPPMTLAA
ALHFLQSEHRRYARDRNEWEIERAEMRARIALLEGEKRGNEGALKSLGRRCKMLEMALRG
ERSKFLSTTNALAGSSPSVSGTASPIPGATPLPKEATLGASAIPPSKLAALQKEGGASSA
PTPGTPTSEAPKSAPMAASTSSPGRASDAARLRSDSASTGTGPTVNGFQTGTWSGAAAAA
TASTAGGLRDPRGKARSREYLKQCLQEITYLTSSATLNPLAAHSYAAPSVPRPRKVLPDH
VPTAGPGVLNLAGGAPSSLPPAATGPTNLAPTELEPFANTAIPPSTAPSIPSTLPPPPPA
LPPLAPDAPKQDLLTSFPSDPPSAFVPLRRQISQPGQPGRGRDAPATTKEHDELDRAIAE
MSKREEGVKVTDEAVEQPHAPVVAVEADEALKADDVKPEPLIDETAVVNAAPGAAAEKAT
PSAGETAEAEPSTAFPADAETAEHDTPLEQQAAPEANEEKPDDKDVEVVESAPHEKADDP
FEPVGESSLQGAKEEEESEKAEEEKAESIEEARSQDLVGRDKRFGSGTLSRGRASRPGLF
SSFDGGDGDGEGGRGPTEGGEGGGELSGSEGSVGGGEVKEEEEEEVPTAYFRPDEGWKEK
LAQAGRRAYVASAASLREGGGGDAELDGLEWDLEDDNSADSSAANGRSAKPRRAKQASEE
TVGLTGVDRYKARRVLKSHLDAVRTVAFVPSNDGETDLVTGGDDCVIKLWRGVLDRKSSR
SDLEPVVTYRGHTAPVTALLVTRASEKSEAIVVSASLDSTIRLWRLPDASRSTYDAVESE
LLLAVLETNGDAAWGLADLPDSTTSRIACITASGAIQEWDLETGEMSASYTWGEPDAASQ
GSLKKRLQQRPTPSAITTVVVDGERLLAVAFQNAIVKLFRPSSGEEVKRVDANESYDGTS
DTQINAIAVCSDAGLLATAHEDNHLRVFDLASGDCLVSTRAHLDGVTSVSFRPSSAGNSL
LATSSHDGSVRLWTFDRPAEGPATLTCVQEESTHRIKCAEGVLDVAFTSAGDALVSTGAD
GTVRVWQK