Protein Info for mRNA_5305 in Rhodosporidium toruloides IFO0880

Name: 13673
Annotation: K14859 SSF1_2 ribosome biogenesis protein SSF1/2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 667 transmembrane" amino acids 71 to 89 (19 residues), see Phobius details PF04427: Brix" amino acids 43 to 392 (350 residues), 138 bits, see alignment E=2.1e-44

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (667 amino acids)

>mRNA_5305 K14859 SSF1_2 ribosome biogenesis protein SSF1/2 (Rhodosporidium toruloides IFO0880)
MPRKGQKRKKTRTHVKAPAATDPNAPKVPKSFVVKSGAVGGSVGQLTKDVRRVLEPNTAT
RLRERKSNRLRDFVSMSGPLGVTHLMVFSQPPATDAPLPAPSTSSSETKETAAERAERSL
IEGTTTVNLRLIRLPRGPTLNFKVLRYSLASDVLRMARRPRSVGREFAEAPLLILSGFGG
EDKQLKLMTTVFQNLFPPIHVQTMALSSARRVVLLSYNSTTHTIDFRHYVIQVRPVGVSK
PIRKIIAGSTNNKVVPLSRKRPLSGGATSESEATDDDADRVVAPRPRPSKTKAKGVLDLS
RAEDISDYILRQEQMGFVTSDSEMSDMSDAESSHGGGGMSGGSDSEQDEKKGKVRLASDY
VGRGNRGKGVRGEKRAVRLVELGPRMELGLIKIEEGVGEGEVLFHEMIHKSNREAAELAK
VHAARRKLAAERRAQQEANVAAKKAAQGKGKERAEGDEDEEDAEQEPEIDDEEAEEVYAR
EHGLQGGEDDDEMLDDDSDEEDDDEEEEGEEGEDVQMAPDSDADDFSDEEASWDEEDDDS
DTTPIPVSQAHLLDELPPRQPPKKKARVGPASFSTKQFKRIDKDQVRQALPARGISLQRG
PTKKERKRQEEQEKKRNRGQKKEGGARYEDNHPEEKDKGRAGASGRGGRGGGRGGRGGAG
RGRGRGR