Protein Info for mRNA_5312 in Rhodosporidium toruloides IFO0880

Name: 13680
Annotation: K18182 COX16 cytochrome c oxidase assembly protein subunit 16

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 119 transmembrane" amino acids 26 to 46 (21 residues), see Phobius details PF14138: COX16" amino acids 26 to 105 (80 residues), 98.6 bits, see alignment E=1.2e-32

Best Hits

Swiss-Prot: 44% identical to COX16_PHANO: Cytochrome c oxidase assembly protein COX16, mitochondrial (COX16) from Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)

KEGG orthology group: None (inferred from 46% identity to mgr:MGG_02657)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (119 amino acids)

>mRNA_5312 K18182 COX16 cytochrome c oxidase assembly protein subunit 16 (Rhodosporidium toruloides IFO0880)
MSSFGTKRVNPSRFTISLRRHPFTHFGLPFLSLIVLSSFALTSFTTTRYDLRDQKVRSVS
KEDELGMRKDRRKINARDEYYRMQALDQLGESDSYENKRVERLPGQAEWGELPVARKGP