Protein Info for mRNA_5315 in Rhodosporidium toruloides IFO0880

Name: 13683
Annotation: K06158 ABCF3 ATP-binding cassette, subfamily F, member 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 PF00005: ABC_tran" amino acids 204 to 396 (193 residues), 72.5 bits, see alignment E=1.3e-23 amino acids 547 to 678 (132 residues), 78.2 bits, see alignment E=2.2e-25 PF12848: ABC_tran_Xtn" amino acids 436 to 514 (79 residues), 80.1 bits, see alignment E=2.5e-26

Best Hits

Swiss-Prot: 57% identical to YB89_SCHPO: Uncharacterized ABC transporter ATP-binding protein C29A3.09c (SPBC29A3.09c) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: K06158, ATP-binding cassette, sub-family F, member 3 (inferred from 58% identity to ani:AN4315.2)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (750 amino acids)

>mRNA_5315 K06158 ABCF3 ATP-binding cassette, subfamily F, member 3 (Rhodosporidium toruloides IFO0880)
MATQLIQRALPNLDFPVLSYINSLFTTSSAESDPDDDPVSSFIRPLLESESANPISQDEI
DRICTECANLWQQLGGGKGKEAAGREPAKLEVALDMKRQEMKSKRQAVTQVVDIASVVKA
RESQVNMKALEKAEAKLKAKLEKRNARSLYEGSKLMQAQQSKKSYEELFLEVNPLQAVGS
GKGKSKDIHIEGIDLNFGSNRILSGATLTLPYGRRAGLIGRNGIGKSTLLRAMALREVAI
PQHISILYVQQEVVGDDTPALESVLQADVHRSHLMAEEKELNEQITQHEKEAEELAAAAS
GASEEEREKQHAELRKLERKKDDAMARIGEVQKLLIEIDADSGPSRAAELLAGLGFSKAD
QDMPTKAFSGGWRMRLSLARALFCKPDLLLLDEPSNNLDLNALAWLEDYLQTWPSTLLVV
SHDRSFLNAVATDIIHQHNERLDYYKGNFAQFYATKSERAKQQRREYESQLQYRQHLQAF
IDRWRYNANRAAQAQSKIKILEKLPELTPPEEDDVVTFKFPETDKISPPLLQLTDVEFGY
TKDKMLLKGVNMDVGLDSRIGLIGANGAGKSTLIKLLIGELQPVRGQQSRNGRLRIAYFA
QHHIDSLDLNVNSVAYLQRLFPGLTEQQYRSHLGAFGITGMTSLQLIGTLSGGQKSRVAF
AVLSMSKPHILLLDEPTNHLDIEGLDALMDALNVWNGGVLVISHDSTFIHTVCKELWVCA
DGTAQKFYGDVDEYKKIIVSGNKTMRPTQV