Protein Info for mRNA_5320 in Rhodosporidium toruloides IFO0880

Name: 13688
Annotation: K03038 PSMD7, RPN8 26S proteasome regulatory subunit N8

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 332 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details PF01398: JAB" amino acids 13 to 124 (112 residues), 105.1 bits, see alignment E=2.4e-34 PF13012: MitMem_reg" amino acids 179 to 310 (132 residues), 113.7 bits, see alignment E=6.4e-37

Best Hits

KEGG orthology group: K03038, 26S proteasome regulatory subunit N8 (inferred from 59% identity to mgr:MGG_01059)

Predicted SEED Role

"proteasome regulatory subunit Rpn8" in subsystem Proteasome eukaryotic

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (332 amino acids)

>mRNA_5320 K03038 PSMD7, RPN8 26S proteasome regulatory subunit N8 (Rhodosporidium toruloides IFO0880)
MATTTPTLLTLSTQPCHVHPLVLLSIQDHFHRVAKNTRKRVVGILLGQELQKGGWEVTNS
FAVPFEEDEKDPRTWFLDHNYIEAMNDMFKKVNAREKLIGWYHTGPRLRASDLEINAVVK
RYTQRPIMVIVDVRPDEERAGGGGGIPTDAYVAVEEIKDDGTASQHTFIHVPSLISASEA
EEIGVEHLLRDISSTALTTGSLSTRVSSQLSSLRGLGARLVEIRDYLTEVVEGKLAVNQQ
IVANLQDVFNLLPNLEAAVQGGMVAEPPCEEGEGEGKGRKRPFTVATNDQLLVMYLSSLI
RTVIALHDLVRPISPPSSSPARRVDIRLAGRY