Protein Info for mRNA_5323 in Rhodosporidium toruloides IFO0880

Name: 13691
Annotation: K10842 MNAT1 CDK-activating kinase assembly factor MAT1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 410 TIGR00570: CDK-activating kinase assembly factor MAT1" amino acids 66 to 273 (208 residues), 225.8 bits, see alignment E=4.2e-71 PF17121: zf-C3HC4_5" amino acids 66 to 113 (48 residues), 74.9 bits, see alignment 5.7e-25 PF00097: zf-C3HC4" amino acids 69 to 112 (44 residues), 21.7 bits, see alignment 2.2e-08 PF06391: MAT1" amino acids 117 to 274 (158 residues), 142.2 bits, see alignment E=3e-45

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (410 amino acids)

>mRNA_5323 K10842 MNAT1 CDK-activating kinase assembly factor MAT1 (Rhodosporidium toruloides IFO0880)
MAAPKPRFFLGSKRGGAAPSSASRTSTPSSSARATPSSSKAPPPPADAPILGADGDRRMQ
EFSSPDDVCPVCKVDRYLNPKLRLMVSKCYHKMCESCLDRLFSLGPEPCPVCGQTIRKSQ
FQPQIFENLEVQKEVAVRKRTAKIFNKSREDFPSDAAYNDYLEEYESITFSLIHAIGSDL
AATEAKIRAYELQNRQSIEDNEERREREKAELEAREKGEREWRELERRRYMEEEERLAKE
KEADRRKVLQLLESGTADAASIVAASRKRSSARDAFPSTDDSGIPRLKFLANLTNKSHSP
SSEPEEPLDALDPLDNETLYDSYDALYTIFPRLSVARESGGKSYDPGVGALVKEAGTADE
GGFRVEEVWEKAVRSAVAGLWDAPLGWEDPGPSAEGNGVAASAMQVDIAG