Protein Info for mRNA_5330 in Rhodosporidium toruloides IFO0880

Name: 13698
Annotation: BLAST ZYRO0C04598p [Zygosaccharomyces rouxii]

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 603 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 63 to 81 (19 residues), see Phobius details amino acids 88 to 109 (22 residues), see Phobius details amino acids 123 to 143 (21 residues), see Phobius details amino acids 188 to 210 (23 residues), see Phobius details amino acids 246 to 271 (26 residues), see Phobius details amino acids 310 to 331 (22 residues), see Phobius details amino acids 353 to 372 (20 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (603 amino acids)

>mRNA_5330 BLAST ZYRO0C04598p [Zygosaccharomyces rouxii] (Rhodosporidium toruloides IFO0880)
MTSRSDYASLALSSISWFTPANKNVFPELCKGKFTDVDLYCATGTSDLCCGLCPNTSVSG
LGQFVWAIISYGIASLAYSLAPGEVWGLAVMQVMLANAFIFAGLIRVWAGASDGGMAKWQ
VQFLWPQALAFIFIMAPAILTPQWARLGRTQLDMEKTLNRLTGDARRVTRAQLREAEVRL
VKRQHQTWSWCVITFWFVNMVFWTVGFVWASRADIDYAQSNCDDVVQPTLTPVIASMFLT
VPLDLALTLPSTACILGGIAWLMVFFDAWIFLGKDKIGGSDYIIDVWDRHFGKTGVQRTW
KEHRRLERKVTIGVTVGLFLLWLILNCWMYLEGINNFLLSGSDFVTFGQVEQFTALFPDL
LGLFTALQAYFSSRDELKTWRKESTSSEHNGGYGEESSDRSHRASLLPPLSRRSSFKFDT
DAAMEKARKGSRSSASAESKGKKRASSVSSRRERKIEEISTDSEDAYAPGPSTRVKDRKM
EDYGSSPGHSSHSSSHDSHRSDSAHSPSSRHDSHHTPSHLAPASSSQYDSLLDLYDHSRP
STRHSPSHDSHHDDTANPRVSFSSFKNKYLDSEPDEFHQRVVRQGSLGRSGRGESRRRRR
ESE