Protein Info for mRNA_5332 in Rhodosporidium toruloides IFO0880

Name: 13700
Annotation: K01904 4CL 4-coumarate--CoA ligase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 604 transmembrane" amino acids 277 to 292 (16 residues), see Phobius details PF00501: AMP-binding" amino acids 54 to 482 (429 residues), 286.6 bits, see alignment E=2.9e-89 PF13193: AMP-binding_C" amino acids 490 to 574 (85 residues), 57.4 bits, see alignment E=2.5e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (604 amino acids)

>mRNA_5332 K01904 4CL 4-coumarate--CoA ligase (Rhodosporidium toruloides IFO0880)
MPYDAQTGLYTSKFGTTPLPDRALTIFDFLFDLETPFSRDPKAFKRPDPRGRPWILDAHS
PRSYTLEQAKERTLDLSRAFAARGLKEHDTVLVFSPNDMDYGPCLWATFRAGAVASCANP
SYTADELAHQIRTVDKPHPVKLIVVHPDALETTVQACEKSGVSSEMIVLIRPPTSDPPVN
AKPLAAGFPTLDDLIKESRDKPLPPKVTLKQEEMKTRLALLSFSSGTTGLPKAVRIPHYA
LITNVLQASSHWQQTFPLQPYDAKEKKGDVVMACLPFYHIYGLVVILHGSLYQAAPIVVM
PRFDFCQFLQAIQDHRITTLFLVPPQLIMLVKQDIVKEYDLSSVRLAMTGAAPLTNEMVA
AFRAKYPHVGVGQGYGMTETSTIISLLDASMPGGFPGESAGMLVPNIEAKIVSPEGKALP
PGEIGELWSRGPSNMLGYLDNEKATRETLDSEGFVHTGDEGYITKDGLLVIVDRIKELIK
VSGFQVAPAELEGHLLGHEDVQDCCVIGIPDEKRGEAPKAYITLTPAAQSRLKSEGEDEI
ISSIKKWVTDHKIKYKALAEVEFIDAIPKNPSGKLLRKDCAFQFSLHSKLSTTVPRCGLS
NLPS