Protein Info for mRNA_5338 in Rhodosporidium toruloides IFO0880

Name: 13706
Annotation: K00891 E2.7.1.71, aroK, aroL shikimate kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 874 PF01202: SKI" amino acids 52 to 181 (130 residues), 102 bits, see alignment E=3.9e-33 PF01487: DHquinase_I" amino acids 282 to 535 (254 residues), 124.1 bits, see alignment E=1.1e-39

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (874 amino acids)

>mRNA_5338 K00891 E2.7.1.71, aroK, aroL shikimate kinase (Rhodosporidium toruloides IFO0880)
MLDPGPSNQRLSASTPTPAALATGTRPRLASSHAMRQPLYDPDATIVLIGMRGVGKTTLG
LIAATSLRRSFIDADSAFQTLHGPISQFVTTHGWSAFRDAETVILKRLLEEHPRGYVIAC
GGGVVEREENRNLLQRFKDSGGPIVHVVRDKEETVRYLVDEQARPSWGEEIRSVWARRTP
YFESLCTHTIVSLTAYPPPPSPQFLMKHVETAFVRLLRSIFGFASSHVPLVAGPRPSPVT
GPSSGEYGGYGACESELGRGAKGSRTSFVALNFPDLRVVSAETIRKVAGGVDVIEMRVDT
LVEVETVPPFSRIGSPANGDSSAAPTPRRRRYPSPHLVAVCFGHLRRCSPLPILYTVRTE
KQGGAFPDPYTDNPDLFADYLALVELGFKLGAEYVDLELALPDEEIQRFLGLRGAATQVL
GADHDRKGEWRWDSQEVLDKYLRAARLGCDVIKLVSTPTTFDSNLELLKFRAKVDALTSN
ETGADRPIPLLAINLGKGGQISRYLNPVLTPVTHPLLPGVAAPGQLTFAQTQQALYLSGL
TLEKTFFVSSASVAETFSREAHTLGLPYNFLVEDRLSMRASEPNFGGAYLGAPSSPLPVS
SISAPDEVLPPAASTGWADLCVPACTEPNSYDVPPSSLGYYKHTNVRVLALAEVITQNLS
PINAVGTHTCALLVGLAKKDRSEVVEALRMVGARWVFLLACEGDEGDGAGSSAATPSRPA
SPRSPSRPSTPSGPHPPTSSLPYPQHAPLQLLPIPSFSAPLLYSKRPPTIIVSSDDLLVP
RSSASPASSPSPFPENLFSSPTGGCALDLSLASGTRRGLLANAIEAKRARARGAQVNGKT
GHVVVDGWQVLGVKDVQSECERQAFRALTGRRMG