Protein Info for mRNA_5347 in Rhodosporidium toruloides IFO0880

Name: 13715
Annotation: BLAST transmembrane protein, putative [Rhizoctonia solani A...

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 381 transmembrane" amino acids 35 to 59 (25 residues), see Phobius details amino acids 70 to 93 (24 residues), see Phobius details amino acids 113 to 133 (21 residues), see Phobius details amino acids 144 to 166 (23 residues), see Phobius details amino acids 186 to 208 (23 residues), see Phobius details amino acids 238 to 258 (21 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (381 amino acids)

>mRNA_5347 BLAST transmembrane protein, putative [Rhizoctonia solani A... (Rhodosporidium toruloides IFO0880)
MSVVPMDAGKGLTDPAQIAAAAAAQQKFFVVQFGIPILIATTLSCFFAGLVLSTIFTYFS
RYGKSDRWAFRILVGYFLLALLGDTGTQIAWCYGYTITSQLDPASVLLMPKCFAAYTVLT
AITVFSAQIFFNWRIWVISGRTQWPLCGTICFIQLGSLACGCYMLYEMSVKKQFSEFGQV
RQAPWAWLGAGLFTDILITAGMTYYLLVVPRLNGTNARQHQVVESPLRRLAIQSFQTNFL
SLCIQTTSLVLMVIKITTFHYSISGFQEAKIYIASVVISLNARHSTSDRSAHFSESNPTA
SKRSKGFGSRFNRSSIGTGIASQQQQQSMHVHVEREQQVEVGETERPYTVKFDRADSDWS
SAEKGDVELGRLEDVSINEKI