Protein Info for mRNA_5351 in Rhodosporidium toruloides IFO0880

Name: 13719
Annotation: BLAST transmembrane protein, putative [Rhizoctonia solani A...

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 436 transmembrane" amino acids 17 to 39 (23 residues), see Phobius details amino acids 47 to 72 (26 residues), see Phobius details amino acids 90 to 114 (25 residues), see Phobius details amino acids 123 to 147 (25 residues), see Phobius details amino acids 165 to 186 (22 residues), see Phobius details amino acids 207 to 229 (23 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (436 amino acids)

>mRNA_5351 BLAST transmembrane protein, putative [Rhizoctonia solani A... (Rhodosporidium toruloides IFO0880)
MSGTIVEQAVQATIKPLLVGAFLSCAACGVVICLAHHYFTTFKNDRLVFKILVAVCTMLA
VADAACNADWSYIWTVTNYGNVFILTRMVWHLSAYCGMMTSAVAIVQCFFCWRVWVASQR
KNFLFPGFILACTLAMWGVGIYLTWFLAISDELAAFIDVRGLVCAWAGATAGIDALITGG
MVYYLLVQPRRAAAGNFKSNSRLTEMAIYSVKTNLISAILQICVLALLLGRSGSMDYCYL
GLLEAKIYIGSLIATLNARTPSSSPEAFATPVDALPPAFSIHFSSGASDTKRSHRRSRSE
KLAKLASLIGLGRSSCARDQRSRSVHVTVEQEVAVEQQEEEHELKSLPSFGDVDLEAGAP
TTPPPARRHTSRPSYRRGPTSTMFSTMSAGSSVADRCAIAPFATEDEVRTAVQAEEGRAE
RGSWSGGSEEGRGGGV