Protein Info for mRNA_5353 in Rhodosporidium toruloides IFO0880

Name: 13721
Annotation: Hypothetical Protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 475 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 58 to 76 (19 residues), see Phobius details amino acids 83 to 103 (21 residues), see Phobius details amino acids 122 to 141 (20 residues), see Phobius details amino acids 219 to 241 (23 residues), see Phobius details amino acids 263 to 287 (25 residues), see Phobius details amino acids 352 to 375 (24 residues), see Phobius details amino acids 390 to 413 (24 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (475 amino acids)

>mRNA_5353 Hypothetical Protein (Rhodosporidium toruloides IFO0880)
MTSPISILSSVTAQAAFSSICPDVSFASRVSGEYCSMPWHYVDHKCCGICPSPAINGYGT
IIGFCLASFFNMLIVLCQPASSAIFIAAQLTVAHMFLVAIMARNMMGTASNGANGIQAWH
AEFAFLAASSIIGVVLACVLSDAHYIHGFSTHEDLERFLNAQDDLKDARRRAEPGTTVCG
THRLQMQEHEAFVRGEHKANVVRGVHRLRKWHSRNQARILLFAFGGSEAYWFILYAVTIW
FGKDTIFWQPKCDDFIGAASWSLIRGVSFTIFSLAFLFTLFLCIPVFHPTSTYRSAAHFI
VLLFSHHIARPRSNSPSFRDRRRELRNNPTHAPPAEAPAPPIDAPETRPEIIVRFVLSLS
IWSLWFVLLLVVFFQARRDFLLTGTGTAPWPYACIQNLMFGTFPIFKFCLNVVRRSAKDR
KKRRRANGIATPTSTGLSQTMRRRPFGLDRRPATNEQSLSRSRSRGRRQNRTKDW