Protein Info for mRNA_5355 in Rhodosporidium toruloides IFO0880

Name: 13723
Annotation: BLAST transmembrane protein, putative [Rhizoctonia solani A...

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 354 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 42 to 67 (26 residues), see Phobius details amino acids 87 to 106 (20 residues), see Phobius details amino acids 117 to 139 (23 residues), see Phobius details amino acids 159 to 181 (23 residues), see Phobius details amino acids 201 to 219 (19 residues), see Phobius details amino acids 232 to 247 (16 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (354 amino acids)

>mRNA_5355 BLAST transmembrane protein, putative [Rhizoctonia solani A... (Rhodosporidium toruloides IFO0880)
MPLSIKDIIGPVLVGACLSCFGCGITLSLSTRYWARFHVDRIWIRIAVVLSMLLAMIDTA
FNGTWAYKWTTTYYVLPNKLSLLPWELTANCFVMSTSIVLAQHFYLYRLFSLSGKNWLVA
APVSVAALGCWGVAIYMGWFCSKHPNDIAAYADITNVSWVWFAGAFVTDAYITAGLAYYL
VIRPKSGPSLASSPKLVALRAAQCNAFAVVWHLVIVILHAHDNNTFQDTYFTFSLVKVYT
GSLLATLNARSPHAEGSFTDRFPSHAGHTSSFSPSTSSRLKGFGTPAGPPVQVSVRQEMH
IEAERGEDEEELGMEAVKRKKEGGGGGEVVKVQFAGAGERKGADKGGEGDSDEF