Protein Info for mRNA_5359 in Rhodosporidium toruloides IFO0880

Name: 13727
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 546 transmembrane" amino acids 20 to 44 (25 residues), see Phobius details amino acids 66 to 87 (22 residues), see Phobius details amino acids 99 to 118 (20 residues), see Phobius details amino acids 129 to 149 (21 residues), see Phobius details amino acids 161 to 181 (21 residues), see Phobius details amino acids 194 to 216 (23 residues), see Phobius details amino acids 287 to 307 (21 residues), see Phobius details amino acids 325 to 347 (23 residues), see Phobius details amino acids 354 to 373 (20 residues), see Phobius details amino acids 393 to 416 (24 residues), see Phobius details amino acids 428 to 444 (17 residues), see Phobius details amino acids 460 to 482 (23 residues), see Phobius details TIGR00879: MFS transporter, sugar porter (SP) family" amino acids 11 to 492 (482 residues), 403 bits, see alignment E=8.8e-125 PF00083: Sugar_tr" amino acids 25 to 496 (472 residues), 403.9 bits, see alignment E=9.8e-125 PF07690: MFS_1" amino acids 31 to 422 (392 residues), 82 bits, see alignment E=4.1e-27

Best Hits

Swiss-Prot: 58% identical to QUTD_ASPNC: Probable quinate permease (qutD) from Aspergillus niger (strain CBS 513.88 / FGSC A1513)

KEGG orthology group: None (inferred from 58% identity to ang:ANI_1_1882074)

Predicted SEED Role

"Quinate permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (546 amino acids)

>mRNA_5359 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MVNLFERIEDRPTPKAVYNWRVYACAIVAATAAIMIGYDSAFIGTSMALASFKNEFGLAH
KTSKQFAAISANIVSTYQGGCFFGSLLGYPLGQILGRRLGLFISALVFVLGAGVMLAADG
ARGLGPIYGGRIVAGLGIGAASNLTPLYISEIAPPAIRGQLVGMYELGWQIGGLVGFWIN
YGVSENIPSSHKQWLIPFAVQLIPGALFAIGIPFFVRESPRWLITRGRRSEALKNLCYIR
KLQPEDAYIINEMNEIDVQVEHDRTAVGEGFWAPFRQVFGKGFLFRRMLITTSLFVWQNG
TGINAVNYYSPTIFKSIGVTGNTSLLTTGVFGVIKTALALVWCFIIIDRFGRRGILLVGA
TGGALSMFAIGAYNKIQNPAAHPTPNLPPGGKAAMFFFYLWTAFYAVSWNGTPWVVNSES
FPGAVRQVTQCFAATSNWLWNFVISRATPTMFLNMGHSGYGVYLFFAAMQVLSIPYICFL
LPETRNIPLEEMDRLFAQRNVWNANKIVMAELRREHELGAKNPAYLKTEEGSMEEVEDVK
EREEVA