Protein Info for mRNA_5370 in Rhodosporidium toruloides IFO0880

Name: 13738
Annotation: K18443 GBF1 golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1599 PF12783: Sec7_N" amino acids 357 to 548 (192 residues), 74.4 bits, see alignment E=1e-24 PF01369: Sec7" amino acids 619 to 803 (185 residues), 214.1 bits, see alignment E=1.4e-67

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1599 amino acids)

>mRNA_5370 K18443 GBF1 golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 (Rhodosporidium toruloides IFO0880)
MTATLQDGGLARPGGLAEEASAFSVEVPRANLIHAEILAVTSAMRKNQRWASAAAYTPYP
LLASHRLNGSEGVGGSGMSQAGSLFKGRSGDSQSRRRDESLGLMEGFAVLKMRLRDMADT
DEVDAAALLQPFLEVVRSPETSGPITATALSSIDKFITFSVLTPSSPNLAIAMAQLSSAG
THCKFEASDSVSDEVVLLKILDVLRNCLTGRLGQVLSDESVCEMMETGLSMCCQMRLSEM
LRRSAERTMQAMVAAVFSRLRFIPAEDDEATPDGANLSSNASMYEVSADQSAPGGPKMAA
PDPRSAKIPAAGPATPTSAPAYAEAGRGPEDGMSKADGEPVDEEIEIAPFGLASIQELLR
VLISLLNPHDQQHTDTMRLMALGLLNIAFEVGGRSIGKFPTLRMMVADHLCKHLFQLARS
DHPQILSTSLRVITNIFDTMRSHLKLQQELFLSFLLDRLILPNAPPNVRKADLETELDRA
TWAQDSADSTASARPSTPLSASVREKDRDRAGPSAESRALMLEILGHFVRGKYSMVDLWV
NYDCNIEGEDLYERLVKFLSRGVYPQAQGPSYQQDSSQMVCLDTLLDLVAHMAARLDEQS
DASLPAGLADEVAKSKANKRILLEGAAAFNLKPKVGLKFLEEHGIIYNDASMPRAESLAR
FFKTTPRLDKRLLGDFISRPDQLDVLRAFMHLMDFEGKIICDAMRELLEAFRLPGESQQI
NRIAETFAEVYFATHPPEIKSQDATYVLAYSVIMLNTDLHSPQVRKRMDLEAYSRNLRGV
NDNENFDPEYLKSIYESIRKREIVLPEEHQNQVGFEYGWKELLRRSRRNGPLTSNPTNAF
DRGMFSIAWKPIVSATCYAFASFRDDYMIQRAIGSINHCAALAARFDMPEVFDFLILSLS
RVSGLVQAPAEASEVGNFPVVDVEGQKITVSPLAVRFGMNVKAQLAAVVLFAIANNNGRS
IRKGWSQIFEIYQTLFTHSLLPPSMLMMEDFLSGTSAIPLKPKTAPTPREERRGDGGLLS
TLSSYLLSPYGPSGDMAGTDFTDDDVETTLSAVDCIASCHVDELYSQIFDLKGDALVAPV
QILFDLVHRITIDRVRTRSGSGSVPNSPQININASRVQLPYDPAAVLLLEIATSIVTRSQ
DYLTELWPTTFDFLSRLIAHANSFSSLFNERVVAALLRLIAEVIKIDELRDSCFLALDML
RSLSPPVLSSVAEPLMAGLSRVFLENAARVHSTTEWNLLFALFSATAQQEEAAKISMDLL
RQLASGQLGTSLHADNYAAFLQTLAGFAHVAPSNKASDNANDEATLARGLQIVDVLREVQ
ASIPNLIATSTLSPARAWEAAWIPLLSAYAQLCLNPARELRQSAITSLQRTLLAPEILQN
DDVDLTIIFERVFFPLLEELLKPQVFRRDPEGMGETRLRASALLCKIFLQYLTQLSERQG
MQTMTELWLKILGYQDRFMHSGRRDQMYEAVPELLKNVLLVMNASGFLLPPYAEGRTEAQ
ARLFDLTFNRIEPFLPELQRELFPPPRVPVPFSNPSSGQPPAPAPLQPAPSSVHPPPVSR
PNPADTPYDSEPLSPQTQPQESQGREAYSSAQTVDMFGP