Protein Info for mRNA_5389 in Rhodosporidium toruloides IFO0880

Name: 13757
Annotation: KOG0750 Mitochondrial solute carrier protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 296 transmembrane" amino acids 271 to 291 (21 residues), see Phobius details PF00153: Mito_carr" amino acids 120 to 197 (78 residues), 33.3 bits, see alignment E=1.9e-12 amino acids 207 to 293 (87 residues), 55.5 bits, see alignment E=2.3e-19

Best Hits

Swiss-Prot: 65% identical to GGC1_YEAST: Mitochondrial GTP/GDP carrier protein 1 (GGC1) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

KEGG orthology group: None (inferred from 75% identity to uma:UM04530.1)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (296 amino acids)

>mRNA_5389 KOG0750 Mitochondrial solute carrier protein (Rhodosporidium toruloides IFO0880)
MSPPPAGGKDSHAARILGSGTSGIAELIIFHPVDTVAKRLMSNKVSGMPMMQVVFREHAT
APAGRKLLSLFPGLGYAAGYKVLQRVYKFGGQPYFNDFLSKNFKTQFSNTFGEKNGKAMM
SATAGSLTGIGEIVLLPLDVLKIKRQTNPEAFRSRGFVQIVRDEGFGLYRGASWTAARNA
PGSFALFGGSAFTKEYVFGLQDYRSATWYQNFVASIAGSVSSIAISQPLDVIKTRIQNQN
FESKVGGMTVVRDLIKHEGFSAFFKGLTPKVLVVGPKLIFSFTLAQSLIPWFSNFV