Protein Info for mRNA_5396 in Rhodosporidium toruloides IFO0880

Name: 13764
Annotation: KOG4567 GTPase-activating protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1122 transmembrane" amino acids 225 to 249 (25 residues), see Phobius details PF00566: RabGAP-TBC" amino acids 217 to 406 (190 residues), 73 bits, see alignment E=1.5e-24

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1122 amino acids)

>mRNA_5396 KOG4567 GTPase-activating protein (Rhodosporidium toruloides IFO0880)
MERNFERVKRFESLLKPFDPSPAPVSLISGSSEGAATGAEGAETAPTQGPGSAEAWRKDE
LRRLCGEGIPDEPAHLRPAAWHFLLNLSPTPSLLDQYRSFLSEVNSRISTLPPPQPRQPL
DRYDRLLREIERDVERTFGTLAWFGAEIRREEVIEEDAVWDRLELLDETDRQEARDLAAG
GKAGEEGGSGEKTVEAADASTPTAWAPSTARRRPRTRRDALLRPLFLYAFLNPGVSFVQG
MSYLAAIFYRVFFSSPSLDDASQSLSPLEIEATTFFALGALLSQLRDLYLPTLDNLSSPP
LSAPAPIATGLGATVARFNSLLLVIDPPVADALDRKRVDMSGLVMRWLTTMFATEFPLPD
VLRVWDRILSLYPPEGEQPSSEALSPILGHLVDVCLAVVQLERQTILSPFAKLPKILGVL
QKLPIEGEGIDRLLQKAWEVRERRLGRAKRTSVASSTASNRTSVIGGLGKKSWWSSPAKT
DVPTAAAEFELDERSSVAGSDASRPSRFGFGSLAFSSPRSSQADMADNVTVVEGKVLPPP
PARIDQQPTIASLIEEELRSTEKQADEEDYPLEDEEDGADEGPAIHRWMASGWGGLKSSL
SRFAASDTAAALQKRATNLQLAAAHSASTASTRFSTSDAAAALFKAQSNAAAKAQLLREQ
LAEQGPDRLAKIKEAAAGASGRLLASTGSERCGEWRPGSPRETPFTPPGHPGDISPLSSP
RISSIDMGRSPSGGPKPLLLSGSARRAQNSSEDSTSFPRSPSSSPTISRTGQLLSPDISI
PPLSRSPSRGAAHGRSASQFDTPPRTSASAFRPRSSSSSTAQASPGYPLQDEDSPIQSRR
VQDGANGLRRGYGKVRDVEGGSGARPAEGGRGWALSDSPAQASPTVASLPKLDLRVDQLA
TSFSPSSATAISRLSLDDSAAPSEAPFAPPSEQPFLPPIADESLLTADREDEGEFLTPSE
GRSAETSPTRQRVPPRGSSLSSSQGPSSAASALPPPRISSLSSSVPPSASTPSHDAPASL
TADDTVAASPTGSLSRSKIVRRPAAHRKRTSRSSVASASVDLNGPEARRLASEFLVRSDS
SRSTREGGHRRAASDARMSVGDFDESGFLDAYGGEDGDEQQR