Protein Info for mRNA_5398 in Rhodosporidium toruloides IFO0880
Name: 13766
Annotation: K17871 ndh1 NADH-ubiquinone reductase (non-electrogenic)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K03885, NADH dehydrogenase [EC: 1.6.99.3] (inferred from 54% identity to cnb:CNBG4020)Predicted SEED Role
"NADH dehydrogenase (EC 1.6.99.3)" in subsystem Carboxysome or Respiratory dehydrogenases 1 (EC 1.6.99.3)
MetaCyc Pathways
- aerobic respiration I (cytochrome c) (3/4 steps found)
- aerobic respiration III (alternative oxidase pathway) (2/3 steps found)
- NADH to cytochrome bd oxidase electron transfer I (1/2 steps found)
- NADH to cytochrome bo oxidase electron transfer I (1/2 steps found)
- Fe(II) oxidation (2/6 steps found)
- NAD(P)/NADPH interconversion (2/6 steps found)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 1.6.99.3
Use Curated BLAST to search for 1.6.99.3
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (657 amino acids)
>mRNA_5398 K17871 ndh1 NADH-ubiquinone reductase (non-electrogenic) (Rhodosporidium toruloides IFO0880) MTLPRATLARSLARPNSTPSFFTPSRNLAPKRTLFSRAQKPPGWQPFYRRHPRVFAVLAA PFVVGGSLGVALLGLWAYDASTYHHPHAGRVPVDPVALRPERGGKKNLKVAAALIDDLDE RVVNARDKKRLVIVGGGWGSVGILQHLDPGAWHVTVVSPDNYFLFHPLLPSATVGTVEVR SLVEPLRKIIARVSGHFLYGRAVDVDFSERLLEIACPGDEENFYLPYDKLVIACGSVNST HGVPGLENCFQLKTVQDAQAIRRRVMDNLEKAALPSTGEEERRKLLSFVVCGGGPTGVEF ASELWEMVNEDVISYMPGLLRDEIKVHLIQSRDHILNTYAEKISEYAEERFRRHEIDMIL NARVKEVTPTKVVYTTKDPKTGKTTEHEVDSGFTLWSTGIAMNPFTQRVAALLPNQYHKH ALEVDSHLRVIGAPLGTVYALGDCATVETRLVDHLLEFVTRCDENKDGKIDEREFKKMMG YIKRRFPASEKHFGKIEDIFKQYADGKGALGLNELADLFINVSRKITAFPATAQVAEQEG IYLAKKLNVLAKQHDAHVAIDNGVYDDPDDMLYEPFNYKHMGSLAYIGNSAVFDFPGFSF AGGLAAMYLWRSVYLSTSVTIRQRCLLMADWVKRSLFGRDLSKVGSRAALSTPLRAR