Protein Info for mRNA_5407 in Rhodosporidium toruloides IFO0880

Name: 13775
Annotation: K15734 SDR16C5 all-trans-retinol dehydrogenase (NAD+)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 383 signal peptide" amino acids 1 to 15 (15 residues), see Phobius details transmembrane" amino acids 77 to 96 (20 residues), see Phobius details PF00106: adh_short" amino acids 117 to 304 (188 residues), 123.6 bits, see alignment E=1.9e-39 PF04321: RmlD_sub_bind" amino acids 118 to 218 (101 residues), 21.5 bits, see alignment E=3e-08 PF01370: Epimerase" amino acids 118 to 193 (76 residues), 24.9 bits, see alignment E=3.4e-09 PF08659: KR" amino acids 118 to 280 (163 residues), 34.2 bits, see alignment E=6.2e-12 PF13561: adh_short_C2" amino acids 123 to 305 (183 residues), 81.6 bits, see alignment E=1.7e-26

Best Hits

KEGG orthology group: None (inferred from 34% identity to afm:AFUA_8G02600)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (383 amino acids)

>mRNA_5407 K15734 SDR16C5 all-trans-retinol dehydrogenase (NAD+) (Rhodosporidium toruloides IFO0880)
MAIAALSPLHSAEGFTIDVLLRIQRATLLNPALAWLLPVLAGLKATATHPYTSTSLLDAL
QHLPSTFPHILRTDRLSQLALAVFALAAGLQVNSYLSRAARNNFARDRKGWDWKSEVVVI
TGGAGGLGSEVARRLSDKGIKVVVLDVAPLAADAPAGISYYKVDLASAEAVEEVADRIRK
EIGNPSVLINMAGVVRANAILDMPQREVDLTYDINVKAHYYTTQAFLPHMIEEGHGHVIT
IASSTAYHQAATGVAYCSSKAAALSFHEGLTEELRHLYQPSSHARAIRTSVICPAHFKSN
MFAGFESGIPEFFAPSLEVGTVAELVEKTVLSGESQHIIEPFYAKCTPLGRALPTWLYGG
ILACAKDAMGAVKAYKAKEAKRE