Protein Info for mRNA_5414 in Rhodosporidium toruloides IFO0880

Name: 13782
Annotation: HMMPfam-Glycosyl transferase family 2-PF13704

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 470 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details PF01697: Glyco_transf_92" amino acids 85 to 185 (101 residues), 31.2 bits, see alignment E=1.8e-11 PF13704: Glyco_tranf_2_4" amino acids 95 to 186 (92 residues), 40.8 bits, see alignment E=2.7e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (470 amino acids)

>mRNA_5414 HMMPfam-Glycosyl transferase family 2-PF13704 (Rhodosporidium toruloides IFO0880)
MNLPVHGVTRRTGVLACLAIVCLLLLVHSSASSRPLIPLPQAVRFRSSSTLARYLAHPSE
RPALPLVSSISSFSLSPPPPSHPVNVSICAVPTHEEQYLPEWITWHRLVGVERFYLFDNS
PSRRMRRLLKPWIDEGSVVLYELHYKEGTDIGAIYQQHVLRLCEKDVLPHTYWASHHDVD
EFLLVDAPGWSSPLPTPVPPPSSSNSTALATRWTFPLHVRFNEILHRATCVPILRLPFHN
YGVREVGWAESVVEKQTVRDKVDPNFHTYGKIFLHSAQQAKRASWMGPHSCKALPGTVVL
DSHGKRIVNEEGIYPFNGLALPQESLRLFHYVQRSLEDCRSKYRVLANTPNDWRTKDGLT
GCARNYVPLDSELATSEGRDELAALVATDSEEERKALLDRPASWWELFERDTAARDSWQG
RMTRAVLAEWRARGKREGVWWWEEGVADEELDGMEGVRVVRDIERAIMGA