Protein Info for mRNA_5433 in Rhodosporidium toruloides IFO0880

Name: 13801
Annotation: BLAST UPF0658 Golgi apparatus membrane protein [Termitomyce...

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 352 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details amino acids 63 to 86 (24 residues), see Phobius details amino acids 93 to 111 (19 residues), see Phobius details amino acids 125 to 149 (25 residues), see Phobius details amino acids 170 to 196 (27 residues), see Phobius details amino acids 208 to 226 (19 residues), see Phobius details amino acids 234 to 254 (21 residues), see Phobius details amino acids 271 to 294 (24 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (352 amino acids)

>mRNA_5433 BLAST UPF0658 Golgi apparatus membrane protein [Termitomyce... (Rhodosporidium toruloides IFO0880)
MAPLLPLRQRLSALVPRTPATIAHLSVTFLETLVDTVVVGLTLNSFEKHVWQLLMERSDR
SVLPVYLALFVLAHLTQLVLAVDALVAKNTIQVVALLIFNTLFLVYSAIQIHEIRPLVNG
AALKVLIWFIPAMISLTEAVYIVTIWPIYREYGWQIFKTLGADRRIKKCYAWFQVFICIL
KFDFFFFVAFSLQLVFLVPTQTSAERGLTIAALPVTLVLLVLGYFSIRREHKIMVYVFLV
GCAVGCAYFVYKLFIIYRDRQTDYQLVFKSLTVFAALCLAALLITTATVIKCWLNFGSGL
KYQMSRGEILRSTSNLDLKTSPRPIAEGDEYPLGSRDYYTPTGRNRFRMSMD