Protein Info for mRNA_5442 in Rhodosporidium toruloides IFO0880

Name: 13810
Annotation: HMMPfam-R3H domain-PF01424,HMMPfam-SUZ domain-PF12752,ProSiteProfiles-R3H domain profile.-PS51061,ProSiteProfiles-SUZ domain profile.-PS51673,SUPERFAMILY--SSF82708

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 996 PF01424: R3H" amino acids 188 to 237 (50 residues), 28.8 bits, see alignment 9.7e-11 PF12752: SUZ" amino acids 334 to 400 (67 residues), 52.7 bits, see alignment 6.1e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (996 amino acids)

>mRNA_5442 HMMPfam-R3H domain-PF01424,HMMPfam-SUZ domain-PF12752,ProSiteProfiles-R3H domain profile.-PS51061,ProSiteProfiles-SUZ domain profile.-PS51673,SUPERFAMILY--SSF82708 (Rhodosporidium toruloides IFO0880)
MVAAGLGEADQQQSTRSTSLSDGPLAVEAGVNGSALPDEADEVSAGNAGAVRTGRTGETE
GQSLPRPPSPPSTTPYPAPVASTSTSTSTPSPSSSSKPSTTPVLASPAPRKIALLRRPSV
PASMEKQVTEPAERNGVDEVARHAAKLSLSVATDAPLADELDAGDDERPPLDKVLRDGLQ
NPRDRLLLLRAEVEMERFVANSSVTRLPLAPPHFQPGLNSYQRLLIHRLADMFGITREVE
AAPPTMWNAGMINPATGQPQGVVVLVKGEATTIPPHKLASYVPAPDPVPSASPATPVVAT
PNNGSARPASPAPSATDSITAASSSSAPPTPAPLPVFKILPRANASRTASSASSSVVGEE
DGGSSASGGMNAKGKGRRDLTLEEREAAYKEARDRIFNAPEADRSTIASTSAASSVVGED
SASVRSLGVGITRPSSAGSTFSRSSAALSVSGSRPPPSVASESSSSIRSGYLGYYQPPPS
FQVPGGPYSGAPSLRPSAPSFDPVTGTWTYGQPQPEYTYGGRPAYGQPGPGAQIPPPPPP
PAPYGYPPANPAYAPQQPIYGDALPPPPPLQQPPSAWSRGLPSPALSSSSGGSFPPQSFY
PSALSQPLQQTPPATTSNDSGYLMRFPEGAVVTPGGSVVGPPTPFSSVVSTGGASLRSGS
SLSLASSASRGTRGATAGSSGPPSLRRLSQSTTHSIGSVSAVSSAPVSEDAASRRSPSNA
EDASPETSLGGRSEEGSSRTGASTPASEGRRRDRQPTIVGERPAAAEGEEGAKGKAVLHP
SLPPKPAWVATRPPPERTAPAPSTSPPHAKSNQPVPPPPPPPFAASTYSSQPAAQRPPLS
FAAAAAPSSAHPPAYPPVPPPPVPGAWNAAAGQVSHPSSAGIPSFANPGEYPALGQQPSS
RTLVAPPPPPPQPYYPPQGPPASAYPSWPSHAATGPPPAHPGLPHVPSQPFVDDLMNMPD
IRRPPPKSTQLFDPSKPLGGSGSMRRGGSGAGQSRG