Protein Info for mRNA_5450 in Rhodosporidium toruloides IFO0880

Name: 13818
Annotation: KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 566 transmembrane" amino acids 73 to 95 (23 residues), see Phobius details amino acids 103 to 126 (24 residues), see Phobius details amino acids 138 to 155 (18 residues), see Phobius details amino acids 167 to 190 (24 residues), see Phobius details amino acids 198 to 219 (22 residues), see Phobius details amino acids 226 to 248 (23 residues), see Phobius details amino acids 346 to 372 (27 residues), see Phobius details amino acids 392 to 413 (22 residues), see Phobius details amino acids 426 to 447 (22 residues), see Phobius details amino acids 459 to 485 (27 residues), see Phobius details amino acids 505 to 522 (18 residues), see Phobius details amino acids 528 to 547 (20 residues), see Phobius details PF07690: MFS_1" amino acids 90 to 505 (416 residues), 91.2 bits, see alignment E=6.8e-30 PF00083: Sugar_tr" amino acids 120 to 252 (133 residues), 43.8 bits, see alignment E=1.7e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (566 amino acids)

>mRNA_5450 KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MAWGILEDKHYPNGDVPGTALLDDKKATNYDQNVVEALKKGTGRSSHVVLVPQPSDDPND
PLNWPAWLREANFWVLTFVAGIVGGVGPALAPGYALLAEQWNITVNAVAATNGDLVIALG
CIMIIIPPFAAKIGRRPVYLAGGLCLFLCSIWSAVSKNLTSFKWSRVFQGFGMAAFEALV
VSTIADTYFVHQRGVRSAIWGFAILAGINLTPIINGYVISNPSLGYRWAFWLLAIVLGIG
FLGIVFFCPETAYDRDAVFAIDEHGIADAAAVNAATDELEKSSNGEDKPIGQVEHLENGS
SVSSRQQISYKPRKSYLQILSPVSYWGRVNVFKLILRPFPFFLSPVVWLGFFVYGLTTVW
LVVLSICSSIIFGAPPYHFNATQTGLTSIGPLVGSIPATVIAGPLCDYIATWMARANGGT
FEPEFRLTLIFPSFLLEFFGFIGWAVITQKNEGGANIHWIGPVMMYTLINIGQSVLSTAI
IAYLIDCHRGHTAEAIAVINLSKNLILYGFTQFAIDMILKLGIPQTMYMLSGLLALSLAP
TIPMWFYGKRVRSWIARHDKLFLIDK